Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2057
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 89  KTCIFYFVSCFIYIFSVV*FTSVCNYS 9
           K    Y V CF+++F+ +   +  NY+
Sbjct: 302 KAIDIYLVMCFVFVFAALLEYAAVNYT 328



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 295 SSYKA*NVYIIFCYIFI 245
           S  KA ++Y++ C++F+
Sbjct: 299 SYVKAIDIYLVMCFVFV 315


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 277 FTLYMNYSNSYGYINCYN 330
           ++ Y NY+N+Y   N YN
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 130  IKYKWNGLNVGNRLKRSLEMSISHYQSTENR*ARRSGT 243
            +  +W    +G+R++R ++ S  + Q+ E +  R   T
Sbjct: 1631 VALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1668


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 130  IKYKWNGLNVGNRLKRSLEMSISHYQSTENR*ARRSGT 243
            +  +W    +G+R++R ++ S  + Q+ E +  R   T
Sbjct: 1627 VALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1664


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 149 PFHLYFILKVFHSYCCNFIKKTCIFYFVS 63
           PF +  +LKV+  Y       TC F F++
Sbjct: 184 PFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 149 PFHLYFILKVFHSYCCNFIKKTCIFYFVS 63
           PF +  +LKV+  Y       TC F F++
Sbjct: 184 PFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,942
Number of Sequences: 438
Number of extensions: 3215
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)