Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2051
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.047
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 32 0.062
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.3
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.8
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.3
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 3.1
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 4.1
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 4.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 5.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.4
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|... 25 7.1
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 9.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 9.4
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 9.4
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 9.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.047
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +3
Query: 78 PSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRK-PSRPTA 254
P + +ST TN++ TS+ T +S PT +SS + + +S P PT+
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS 267
Query: 255 LNA--PKRKRVEPKR*LVTSSTTKPNSGRS*RP--NTIPPTSS 371
++ + T+ST+ P +G S P T+PPTS+
Sbjct: 268 TSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 310
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 31.9 bits (69), Expect = 0.062
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +3
Query: 150 GSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNS 329
GS P+ +S +A++ + ++ + T RKP PT +PK V P+ + S T+P++
Sbjct: 395 GSDHPSSQDNSSKASLVENSQTQSSTPRKPL-PTT-TSPK---VNPEPHSESISDTRPST 449
Query: 330 GRS*RPNTIP 359
R P+T+P
Sbjct: 450 PRKVPPSTVP 459
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.0
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 153 SSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSS-TTKPNS 329
S P+ +A S ++ + + KP++P L AP+ K + P R +SS PN
Sbjct: 978 SPAPSSLARSSVSSQRSSTSIIPIKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNL 1037
Query: 330 GRS*RPNTIPPTSSQRNMK 386
P T PP S + +
Sbjct: 1038 TPVNVPPTPPPRKSSASQR 1056
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.3
Identities = 31/107 (28%), Positives = 47/107 (43%)
Frame = +3
Query: 81 SLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALN 260
SLA +ST + T+ S TSS LT S+ + +ASS + + ++ +S S T+ +
Sbjct: 90 SLASSSTNSTTSASP-TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSS 148
Query: 261 APKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNSNA 401
L +SST S PTSS + L+S A
Sbjct: 149 LASSSTTSSS--LASSSTNSTTSA--------TPTSSATSSSLSSTA 185
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 75 WPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASS 182
+PS + N+TQ T SIW SS T+ S+ I +
Sbjct: 913 YPSYS-NTTQGMNTTSIWNSSNSTIVSNVTATITGN 947
Score = 24.6 bits (51), Expect = 9.4
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +3
Query: 81 SLALNS-TQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTAL 257
SLA +S T ++ S TSS L S+ + +ASS + + TS S A
Sbjct: 128 SLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAAS 187
Query: 258 NAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQ-RNMKLNS 395
N+ + T+S T +S S + TSS + LNS
Sbjct: 188 NSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNS 234
Score = 24.6 bits (51), Expect = 9.4
Identities = 25/107 (23%), Positives = 45/107 (42%)
Frame = +3
Query: 81 SLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALN 260
S + NST + T S TSS L+ ++ + +SS ++ + TS S A N
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASN 220
Query: 261 APKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNSNA 401
+ + T+S T +S S ++ P +S + ++A
Sbjct: 221 SATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA 267
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 1.8
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 198 PQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGR-S*RPNTIPPTSSQ 374
P+K N S K TALN + + +SS + GR + + P SSQ
Sbjct: 9 PKKVGNTEQVSEKQHTDTALNISQDNKTS------SSSAKRGAKGRRGTKGKSGPANSSQ 62
Query: 375 RNMKLNSNALQLKF 416
+ SNAL+L+F
Sbjct: 63 TSNIEGSNALELEF 76
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 231 RKPSRPTALNAPKRKRVEPKR 293
+ P++P L AP+RK PK+
Sbjct: 277 QSPTKPVLLTAPRRKNKSPKK 297
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +3
Query: 75 WPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTA 254
W +A + + + +SY P +A P+ +RN +L RKP T
Sbjct: 522 WNRIAKTPVSSVPSSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRKPLPDTE 581
Query: 255 LNAP 266
++P
Sbjct: 582 SHSP 585
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 192 NVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS 338
+VPQK LN +S S P K+ RV P+R S P+S R+
Sbjct: 275 SVPQK--RLNASSNVSSNPA-----KKTRVSPRRSTAASKKKSPSSKRA 316
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 252 ALNAPKRKRVEPKR*LVTSSTTKPNSGRS 338
ALN KR R K ++ SSTT+P +G++
Sbjct: 464 ALNFVKRVREITKMTMLASSTTRPATGQT 492
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.1
Identities = 24/103 (23%), Positives = 40/103 (38%)
Frame = +3
Query: 87 ALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAP 266
A + +T+ S SY+T + T ++ NL ++ P + +++
Sbjct: 255 ASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSS 314
Query: 267 KRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNS 395
P L TSSTT + + NTI SS+ NS
Sbjct: 315 SFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS 357
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 131 GPDRQCRICLCTVQGERGPQPSR 63
GP +C C+ ++GE+ PSR
Sbjct: 475 GPQSKCIKCVVDIKGEKKDTPSR 497
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 90 LNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLT-SRKPSRPTALNAP 266
L+S T TL + L + + +S P+K R+LN+T S P ++ AP
Sbjct: 572 LSSQNTFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAP 631
>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
3|||Manual
Length = 109
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 200 AEGKELKSHIKEALETNCAKCTKAQKGGTEKM 295
A G E K +T CA+C +KGG K+
Sbjct: 4 APGDEKKG--ASLFKTRCAQCHTVEKGGANKV 33
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 188 GQCTAEGKELKSHIKE 235
G+C EGKEL++ +KE
Sbjct: 315 GECYFEGKELEADVKE 330
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 328 EFGFVVDEVTNHLFGSTLLRFGAFSAVGL 242
E G D + ++FGS FGAF A G+
Sbjct: 1348 EEGLPTDSIRVNVFGSAGQSFGAFLAPGV 1376
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 176 ILEKGQCTAEGKELKSHIKEA--LETNCAKCTKAQKGGTEKMIGHL 307
ILE GQ GK L HI+ A +E NC K + T + H+
Sbjct: 792 ILESGQTVRFGKVL--HIENAGIVEANCEKTNNMRDPLTSTIFLHI 835
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 99 TQTNTTLSIWTSSYLTVGSSFPTYIASS 182
T +NT+++ TS YL+VG+ T I+ S
Sbjct: 181 TNSNTSVNDITSKYLSVGTITLTTISGS 208
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 364 VGGIVFGLQLLPEFGFVVDEVTNH 293
VGG+ G+ + P G VVD + H
Sbjct: 666 VGGVTIGITVTPLSGSVVDFLLKH 689
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 299 GHLINHEAEFWEELKAKYDPTNEFT 373
G+ IN A EELK KY ++FT
Sbjct: 1048 GNAINGSAYTAEELKMKYRSQSQFT 1072
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,271
Number of Sequences: 5004
Number of extensions: 48542
Number of successful extensions: 152
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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