Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2051
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    31   0.58 
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    29   2.4  
05_01_0506 - 4224789-4225376,4225387-4225429,4225700-4225863           28   5.4  
03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405     27   9.5  
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395...    27   9.5  

>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 173 CILEKGQCTAEGKELKSHIKEALETNCAKCTKAQKGGTEKM--IGHLINH-EAEFWEELK 343
           C L +G+   +G  L    +E L  N   C    + G   M   G L  H EA F  E  
Sbjct: 60  CPLCRGE--VKGYTLVEPAREQLNQNKRSC---MQDGCSYMGSYGELCKHMEATFIPEFT 114

Query: 344 AKYDPTNEFTKKYETELKRVTA*IPLKKANSSISCNEI 457
           A+YD  NEFT   E   + + A +  +  + ++  NE+
Sbjct: 115 ARYDLCNEFTNGAEGFFEELMASVWHEGPHGAMQINEM 152


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 180 SKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RP 347
           S R + P  A+ L    R PS  + L  P+R      R + T ST   N  R   P
Sbjct: 187 SWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTGSTPALNRTRGPSP 242


>05_01_0506 - 4224789-4225376,4225387-4225429,4225700-4225863
          Length = 264

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 358 GIVFGLQLLPEFG--FVVDEVTNHLFGSTLLR-FGAFSAVGLEGFLDVRFKFLAFCG 197
           G+V GL+LLP  G   +V     HL GS  L+ F   +AVG +G  DV ++   F G
Sbjct: 105 GVVHGLRLLPREGASCMVSAGDWHLCGSHALKGFWMVAAVGSDG--DVAWEGQRFFG 159


>03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405
          Length = 410

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 368 TRWWDRIWPSAPPR 327
           TRWW R+ P  PPR
Sbjct: 117 TRWWARLPPRPPPR 130


>01_06_0459 +
           29538025-29538579,29539190-29539354,29539448-29539585,
           29539685-29539836,29539949-29540057,29540281-29540379,
           29541051-29541116,29541208-29541315,29541428-29541553
          Length = 505

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 140 SNRRLLIPYVHCILEKGQCTAEGKELKSH 226
           S RRL +PY+H +L  G  T        H
Sbjct: 9   SKRRLALPYLHRLLHSGPATPSPNRFLRH 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,414
Number of Sequences: 37544
Number of extensions: 317415
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)