Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2049
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 29 0.54
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.9
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 5.0
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 6.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 25 8.8
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 8.8
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.1 bits (62), Expect = 0.54
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 108 SEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 281
+++ ++++DTP+ + + +R N EK+ SKL + R ++ KE+ VA
Sbjct: 76 NQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVAV 135
Query: 282 YDEVAQTL 305
E A+ L
Sbjct: 136 NAETAKAL 143
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.2
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = -3
Query: 592 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSR-ISKTSFILL 416
SS +S + +S S+ S++ ++ + M S +SA+P + S I+ +S L
Sbjct: 693 SSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSS--SSAIPTSVNSSTLITASSSNTL 750
Query: 415 VSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATAT 266
+S+ + A + ++ S + A + L NS ATS YL++++
Sbjct: 751 LSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSS 800
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 592 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 461
SSF TS Y+ S+ FK SSV L + + AS+LPI
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.9
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = -3
Query: 592 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLAS--ALPICIRQSRISKTSFIL 419
SSF G TS Y +K SSS LA+ VL+S A P + S ++
Sbjct: 844 SSFFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYS 903
Query: 418 LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSSFP 239
+ S++ R + + S S I + + + SL +S V SSY+A++ + S+ P
Sbjct: 904 IPSSSSRNEGT------TSYSSNITVTSSTLKPSLTSS-VSTASSYIASSASSNTLSTEP 956
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 117 PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 290
P ED P Q I +K+K+ +LQ AGK+L + Q+ A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192
Query: 291 VAQ 299
V Q
Sbjct: 193 VTQ 195
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 189 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 308
LEK KS L +R+ K+L + V KYD+ ++
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIK 47
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.8
Identities = 31/117 (26%), Positives = 55/117 (47%)
Frame = -3
Query: 595 LSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILL 416
LSS +S +S SS I SSS + ++P S ++S+ S S +S I
Sbjct: 254 LSSSSSSSTASSSSSSSSIISSSSSSSSSP--TSTSSTISSS--SSSSSSPTSTSSTISS 309
Query: 415 VSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSS 245
S++ + +S L+ S S + + T ++++S +SS ++ T S+ SS
Sbjct: 310 SSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSS 366
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 343 IAVTCFERSLANSRVWATSSYLATATF*SEFSS 245
IA++CF+ + + W TS + T F S SS
Sbjct: 87 IAISCFQTAAYIVQDWITSPIIRTLPFRSSSSS 119
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 370 KNKLKRKPGFVMQQRPTK*KKFYLF 444
KN+ + K F +Q+RP K +++LF
Sbjct: 1008 KNQQRNKEKFRIQKRPNKKYRYHLF 1032
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,440
Number of Sequences: 5004
Number of extensions: 37170
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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