Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2048
         (428 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4BX90 Cluster: Putative uncharacterized protein; n=1; ...    34   1.1  
UniRef50_A6BJK7 Cluster: Putative uncharacterized protein; n=1; ...    33   1.9  
UniRef50_Q97UJ9 Cluster: ABC transporter, ATP binding protein; n...    33   1.9  
UniRef50_Q05FL1 Cluster: Isoleucyl-tRNA synthetase; n=1; Candida...    32   5.8  

>UniRef50_A4BX90 Cluster: Putative uncharacterized protein; n=1;
           Polaribacter irgensii 23-P|Rep: Putative uncharacterized
           protein - Polaribacter irgensii 23-P
          Length = 236

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +1

Query: 1   IISSICFMHVFIEIPIVTFSASSLLQPTDAKIQNNIAFKRIRVFVLFLLSQFLNHN 168
           ++ +  F+H F E P+V+F   +L Q   A + N++   ++  ++   LS F+ +N
Sbjct: 135 VVLATLFLHHFKEAPLVSFLGDTLKQTKIAIVVNDLHRHKLAYYLFMALSLFIKNN 190


>UniRef50_A6BJK7 Cluster: Putative uncharacterized protein; n=1;
           Dorea longicatena DSM 13814|Rep: Putative
           uncharacterized protein - Dorea longicatena DSM 13814
          Length = 88

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 107 MLFCIFASVGCNKDDAEKVTIGISINTCIKQ 15
           MLFC+    GC K +++K+T G S++  +K+
Sbjct: 13  MLFCMINIAGCVKKESKKITTGSSVDKIVKE 43


>UniRef50_Q97UJ9 Cluster: ABC transporter, ATP binding protein; n=4;
           Thermoprotei|Rep: ABC transporter, ATP binding protein -
           Sulfolobus solfataricus
          Length = 863

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +1

Query: 10  SICFMHVFIEIPIVTFSASSLLQPTDAKIQNNIAFKRIRVFVLFLLSQFLNHNFSWHAKI 189
           S  F+++ I + IV++SA +LL     +I NN+  + I      L    +NH++S+  +I
Sbjct: 170 STLFINIIIYL-IVSYSALALLSSIQNRILNNLGSRIINDLREILYKHAINHDYSFIERI 228

Query: 190 CP 195
            P
Sbjct: 229 SP 230


>UniRef50_Q05FL1 Cluster: Isoleucyl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Isoleucyl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 824

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +1

Query: 91  KIQN-NIAFKRIRVFVLFLLSQFLNHNF 171
           KI+N +I++K+IR+F  F+++ F N NF
Sbjct: 582 KIKNLSISYKKIRIFFKFIINNFYNFNF 609


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,243,278
Number of Sequences: 1657284
Number of extensions: 6701412
Number of successful extensions: 11780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11779
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)