Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2048
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   6.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.6  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    24   8.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   8.7  

>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 46  IVTFSASSLLQPTDAK-IQNNIAFKRIRVFVLFLLSQFLNHNFSWH 180
           IV F+  +   P+ +  + +N++ + +R+F L    + L  +  WH
Sbjct: 219 IVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFLLSAMKCLGCSVIWH 264


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 52  TFSASSLLQPTDAKIQNNIAFKRIRVF 132
           T +  +  Q T+ KIQ N + KR+++F
Sbjct: 103 TMNREANFQRTNEKIQRNKSIKRVKLF 129


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 TPPTSAGLRNYS*TKRKKFKVVILG 397
           TP  S   R++S T  + FKV +LG
Sbjct: 11  TPLKSIAPRSFSTTSSRAFKVAVLG 35


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 25  HVFIEIPIVTFSASSLLQPTDAKIQNNIAFKRIRVFVLFL 144
           H+F++IP + F  S++L+   A  +       +R F   L
Sbjct: 688 HLFLQIPNINFIVSTILRDNTAISRFTTEINFLRCFASLL 727


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 304 YLNYL*DFFNYSFLLLILFENSQDI*DFYSKFLLK 200
           YL  L  +F   FLL +LF +++ I D    +L +
Sbjct: 198 YLYVLFTYFISIFLLYVLFSSTKSIADIRQSYLAR 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,049
Number of Sequences: 5004
Number of extensions: 32359
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)