Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2048
         (428 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117907-1|AAD30863.1| 1956|Homo sapiens tetrodotoxin-resistant ...    29   5.1  

>AF117907-1|AAD30863.1| 1956|Homo sapiens tetrodotoxin-resistant
            voltage-gated sodium channel protein.
          Length = 1956

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1    IISSICFMHVFIEIPIVTFSASSLLQPTDAKIQNN--IAFKRIRVF 132
            ++ ++  +++FI + + +FSA +L  P D    NN  +A  RI+VF
Sbjct: 875  VLGNLVVLNLFIALLLNSFSADNLTAPEDDGEVNNLQVALARIQVF 920


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,931,991
Number of Sequences: 237096
Number of extensions: 939501
Number of successful extensions: 1038
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)