Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2048
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z99281-13|CAB16522.1|  236|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AL021566-5|CAA16500.1|  212|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical
           protein Y7A9C.9 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = +1

Query: 4   ISSICFMHV--FIEIPI---VTFSASSLLQPTDAKIQNNIAFKRIRVFVLFLLS---QFL 159
           +  I F HV  F+ IP    +  SA  +      K+QN I ++ + +FV  L++      
Sbjct: 197 VGFILFFHVLLFLSIPFYIPIMISAQKISSNQYCKVQNYIHWQTLTIFVCKLINIVVVIY 256

Query: 160 NHNF 171
           NH F
Sbjct: 257 NHTF 260


>Z99281-13|CAB16522.1|  236|Caenorhabditis elegans Hypothetical
           protein Y57G11C.21 protein.
          Length = 236

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 100 NNIAFKRIRVFVLFLLSQFLNHNFSWHA 183
           NNIA   ++ F L + SQ   HNFS +A
Sbjct: 99  NNIAHSIVKNFSLHINSQLAYHNFSNYA 126


>Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical
           protein K02E11.1 protein.
          Length = 729

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 161 FKN*DSKNRTKTRIRLKAMLFCI 93
           F N DS ++T ++I  +A+LFC+
Sbjct: 70  FNNEDSSSQTTSKIPKRAILFCV 92


>AL021566-5|CAA16500.1|  212|Caenorhabditis elegans Hypothetical
           protein F08E10.7 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 128 TRIRLKAMLFCIFASVGCNKDDAEKV-TIGISINT 27
           T+ RL+ ML+    S+GC  +  +K+ + GI+ NT
Sbjct: 132 TKNRLRQMLYSKSKSIGCIYESCDKIDSKGINYNT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,690
Number of Sequences: 27780
Number of extensions: 173231
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)