Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2044
         (540 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   6.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   6.9  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   9.2  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 87  FGQMAGWSPAGY 52
           F    GWSPAG+
Sbjct: 81  FSSSVGWSPAGH 92


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 417 VGRSVFYC*L-DDNSTVTWLINVFNLLNYIYKKCTSAKI 304
           +G+S+F     DD+  +   IN  ++L+  +KKC + ++
Sbjct: 144 MGQSIFNITSPDDHDRLRMYINTESVLDGDWKKCFNIRL 182


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 317 VHFLYI*FRRLNTLISHVTVELS 385
           ++F    F RLN  + H+ +ELS
Sbjct: 459 LYFQLCEFSRLNFSVEHLLMELS 481


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 443 PSCLLYHSINLWALCLNA*PPF 508
           P+ ++  +IN W+L  +  PP+
Sbjct: 313 PTTVMSPTINCWSLTSSPPPPY 334


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 53  YPAGLHPAICPNYPFCDVDALAKHTPQGMPIPEWVRNP 166
           Y  G + A CP  P  D   L+   P G    + +R P
Sbjct: 87  YHLGSYAANCPPSPKDDEKCLSLERPSGGGKGKKMRKP 124


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 249 THTAGEYTSYLR*STTSQRFLRMY 320
           T    E  SY   +TTS  F+R++
Sbjct: 127 TFFVNEKQSYFHIATTSNEFIRVH 150


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 74  AICPNYPFCDVDALAKHTPQGMP 142
           A+ PN  F  ++A   +TP+  P
Sbjct: 225 ALAPNLDFITLEAFDFYTPKRNP 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,687
Number of Sequences: 336
Number of extensions: 3844
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)