Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2044
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   4.1  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.1  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   4.1  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   5.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   5.4  
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    25   7.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.2  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    22   8.3  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 132 CGVCLARASTSQNG*FGQMAGWSPAGY 52
           CGVC+ +  T +N  +G+  G +P  +
Sbjct: 190 CGVCILKGKTHENLPWGEWCGNTPFAF 216


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 179 IARAASNSVPKYPADFPAALCPNY--PYCW*IHKLPTLINNKSTIF 310
           I+ AA+N V +Y   F  ++  N+  P  W I  L   INN ST+F
Sbjct: 410 ISTAAANGVYEY---FDKSMKKNWAGPEHWRIQALRKNINNASTVF 452


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 235 GSRKISRILGHRIRRSSSDWQDGWVAHPFWYRHSLW 128
           GSR      GH + RS + W  G +       H LW
Sbjct: 376 GSRLKIHASGHVVERSYASWLGGSILSSLGTFHQLW 411


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 148 WYRHSLWGVLSEG 110
           W RH+LW  L EG
Sbjct: 329 WVRHTLWSCLEEG 341


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 EWVRNPAILPIARAASNSVPKYPADFPAALCP 244
           +W    A L +  + ++S PK  AD+ AAL P
Sbjct: 151 KWPSKVAALQLLGSLASSSPKAVADYMAALIP 182


>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 113 LAKHTPQGMPIPEWVR 160
           LAK   Q  PIP+W+R
Sbjct: 13  LAKAARQNRPIPQWIR 28


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 378 STVTWLINVFNLLNYIYKKCTSAKIVDLLLISVGSL 271
           S+ T   +VFN L ++Y K TS KI++ L+  +G L
Sbjct: 347 SSGTVYFSVFNSLFFMYSKLTS-KILNTLVGGLGIL 381


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 387 DDNSTVTWLINVFNLLNYIYKKCTSAKIVDL 295
           +D+ TVTWL        YI++   S +I ++
Sbjct: 216 NDSETVTWLNTFLQQFWYIFEPSLSERITEI 246


>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 48  ASTQPDSTQPFAQTIRSAM 104
           AS  P + QP+  T+R+A+
Sbjct: 28  ASVDPRTKQPWCPTVRAAL 46



 Score = 21.0 bits (42), Expect(2) = 8.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 111 PSLSTPHRECRYQNGCATQPS 173
           P   TPH E R + G +  P+
Sbjct: 70  PQWKTPHNEFRVKFGISAVPT 90


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 426 GITMHVQVASFIIPSICGHSA*MRDLH 506
           G   H  ++  I+  IC HS  +R +H
Sbjct: 296 GSLCHPDISVMIVSPICAHSLSLRPIH 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,319
Number of Sequences: 5004
Number of extensions: 57466
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)