Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2044
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 29 1.6
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 2.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 2.1
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z75527-1|CAA99774.1| 441|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 8.6
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 27 8.6
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 8.6
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 288 STTSQRFLRMYTFYIYNLED*TH*SAMLLWNYHLISNKTLTAQHGLGIT 434
S T RF R+Y +Y+ + T+ S + W I + L A+ LG++
Sbjct: 238 SQTFYRFKRLYGYYVLQMYLPTYLSVFISWIAFWIDTRALPARITLGVS 286
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 204 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 335
C ++ Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 204 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 335
C ++ Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +2
Query: 71 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKYPADFPAAL 238
PA N F A A H P+ ++N A ++PK PAD A+
Sbjct: 72 PAAINNINFRPNPAKAAHERHSQPVTNMLQNMLTFNRQSAPGRALPKLPADLYTAI 127
>Z75527-1|CAA99774.1| 441|Caenorhabditis elegans Hypothetical
protein C15C8.1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +2
Query: 71 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKYP 217
P PN P A PQ MPIP V +PA A + P YP
Sbjct: 357 PPTPPNPPVNHAIAPVAQHPQPMPIPHQVPSPA-HGAAHGHPQAPPMYP 404
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 211 LGHRIR--RSSSDWQDGWVAHPFWYRHSLWGVL 119
+ HR++ + DW H FW + +LWG+L
Sbjct: 2578 IAHRMKYIMQNQDWSK--FKHAFWLKFALWGML 2608
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 211 LGHRIR--RSSSDWQDGWVAHPFWYRHSLWGVL 119
+ HR++ + DW H FW + +LWG+L
Sbjct: 2589 IAHRMKYIMQNQDWSK--FKHAFWLKFALWGML 2619
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 211 LGHRIR--RSSSDWQDGWVAHPFWYRHSLWGVL 119
+ HR++ + DW H FW + +LWG+L
Sbjct: 2589 IAHRMKYIMQNQDWSK--FKHAFWLKFALWGML 2619
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 473 D*WNDKGGNLDMHSDTQPVL 414
D WND G +D DTQ VL
Sbjct: 1529 DGWNDDDGEIDRMKDTQKVL 1548
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 211 LGHRIR--RSSSDWQDGWVAHPFWYRHSLWGVL 119
+ HR++ + DW H FW + +LWG+L
Sbjct: 2589 IAHRMKYIMQNQDWSK--FKHAFWLKFALWGML 2619
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,078
Number of Sequences: 27780
Number of extensions: 333822
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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