Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2043
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0GU41 Cluster: TGF beta-activated kinase; n=4; Eumetaz...    33   2.9  
UniRef50_Q6FPM8 Cluster: Similarities with tr|Q12218 Saccharomyc...    33   3.9  
UniRef50_A2QUQ2 Cluster: Catalytic activity: Random hydrolysis o...    33   5.1  
UniRef50_UPI0000556A0A Cluster: hypothetical protein PdenDRAFT_0...    32   6.8  
UniRef50_A3LX49 Cluster: Anaphase-promoting complex (APC), subun...    32   6.8  
UniRef50_Q15032 Cluster: R3H domain-containing protein 1; n=47; ...    32   6.8  
UniRef50_Q9LDW8 Cluster: Putative uncharacterized protein AT4g11...    32   8.9  
UniRef50_Q8RXT5 Cluster: Putative uncharacterized protein At4g11...    32   8.9  

>UniRef50_Q0GU41 Cluster: TGF beta-activated kinase; n=4;
           Eumetazoa|Rep: TGF beta-activated kinase - Paracentrotus
           lividus (Common sea urchin)
          Length = 717

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +1

Query: 277 KTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGAT 456
           K P+ +S    ++IPLI  P+ ++       +P  PV+ + P++ +TP T+    P  AT
Sbjct: 413 KVPV-SSPPKPTNIPLIPSPVTHAPVTPTPATPTTPVTPVTPTAILTPTTHYP--PPRAT 469

Query: 457 TYT-----KPFVQTVP 489
           T T     +P+  T P
Sbjct: 470 TPTSTHPSQPYYPTTP 485


>UniRef50_Q6FPM8 Cluster: Similarities with tr|Q12218 Saccharomyces
           cerevisiae YOR009w; n=3; Fungi/Metazoa group|Rep:
           Similarities with tr|Q12218 Saccharomyces cerevisiae
           YOR009w - Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 895

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 280 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 459
           TP + S+S   S  ++    A  +  ++  SP  P S + PS+   P++ + S  +  T+
Sbjct: 427 TPPIPSSSVEPSSSVVPSSPAVPSSSVEPSSPAVPSSSVEPSTPPIPSSSVVSASVFDTS 486

Query: 460 YTKPFVQTVP 489
            T P   TVP
Sbjct: 487 STLPSSPTVP 496


>UniRef50_A2QUQ2 Cluster: Catalytic activity: Random hydrolysis of
           N-acetyl-beta-D-glucosaminide 1 precursor; n=2;
           Aspergillus|Rep: Catalytic activity: Random hydrolysis
           of N-acetyl-beta-D-glucosaminide 1 precursor -
           Aspergillus niger
          Length = 1257

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 24/72 (33%), Positives = 39/72 (54%)
 Frame = +1

Query: 280 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 459
           +P ++S++ VSS P +S P+A S   I   SP      IA  S I  ++++AS    A +
Sbjct: 547 SPAVSSSAIVSSTPAVSTPVASSIPVIS--SPA-----IASGSAIASSSHVASSSTPAAS 599

Query: 460 YTKPFVQTVPIA 495
            + P V + P+A
Sbjct: 600 -SSPAVSSSPVA 610


>UniRef50_UPI0000556A0A Cluster: hypothetical protein
           PdenDRAFT_0192; n=1; Paracoccus denitrificans
           PD1222|Rep: hypothetical protein PdenDRAFT_0192 -
           Paracoccus denitrificans PD1222
          Length = 55

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 483 GLHEGFRVGSGSKRATCNVGVGSDVGARSDVAHGPLWRALLDK 355
           G+  G  VG+G   A  N+G+G  +G    +A G  W+A   K
Sbjct: 9   GIAVGLAVGAGVGSAMDNIGMGVGIGLTLGIAIGSAWKAWTGK 51


>UniRef50_A3LX49 Cluster: Anaphase-promoting complex (APC), subunit 1;
            n=1; Pichia stipitis|Rep: Anaphase-promoting complex
            (APC), subunit 1 - Pichia stipitis (Yeast)
          Length = 1549

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 501  SQCDRHGLHEGFRVGSGSKRATCNVGVGSDVGARSD 394
            SQ D   +HEG+R+ +G      N+G G+D+   +D
Sbjct: 1027 SQNDTEQIHEGYRLAAGISLGLVNLGKGNDLSGLND 1062


>UniRef50_Q15032 Cluster: R3H domain-containing protein 1; n=47;
           Euteleostomi|Rep: R3H domain-containing protein 1 - Homo
           sapiens (Human)
          Length = 1099

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 295 STSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSY 411
           +  Y +S   +SQP+     +I++ SPQ P  Y AP  Y
Sbjct: 614 TAGYPASGHPVSQPVLQQQGYIQQPSPQMPACYCAPGHY 652


>UniRef50_Q9LDW8 Cluster: Putative uncharacterized protein
           AT4g11560; n=1; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein AT4g11560 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 652

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +3

Query: 177 HSFHQEEVCCTCCVYRSCIILCYFSRRSNHLPR*NSSPGFDLLRFFDS 320
           +SFH++EV     ++R C++  YF      LP+  ++PGF + + +D+
Sbjct: 281 YSFHRDEVPAESVMHR-CVV--YFVPAHKQLPKRKNNPGFIVRKVYDT 325


>UniRef50_Q8RXT5 Cluster: Putative uncharacterized protein
           At4g11560; n=1; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein At4g11560 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 587

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +3

Query: 177 HSFHQEEVCCTCCVYRSCIILCYFSRRSNHLPR*NSSPGFDLLRFFDS 320
           +SFH++EV     ++R C++  YF      LP+  ++PGF + + +D+
Sbjct: 195 YSFHRDEVPAESVMHR-CVV--YFVPAHKQLPKRKNNPGFIVRKVYDT 239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,800,809
Number of Sequences: 1657284
Number of extensions: 8441270
Number of successful extensions: 24582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24552
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)