Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2043
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   0.95 
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   3.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.7  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 262  TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 441
            T  +  TP+ +ST+  +SIP+ S  +  S+  I   +     + I  SS +  +T I S 
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSS 1323

Query: 442  PLGATT 459
             +  T+
Sbjct: 1324 TVVNTS 1329


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 134 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 253
           S I  PW T+    + ISS  GL+   L ++L+ H   ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 385 VSYIAPSSYITP-NTYIASGPLGATTY 462
           V Y++P+   TP + +I   PLG +TY
Sbjct: 806 VQYVSPALKATPPSVWIPKDPLGLSTY 832


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +1

Query: 307 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYIT------PNTYIASGPLGATTYTK 468
           VSS+PL S   +  +H      P  P SY++ ++  +       + +  S P    +Y+ 
Sbjct: 460 VSSVPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYST 519

Query: 469 PFVQTVPIALTGSL 510
               T PI ++ SL
Sbjct: 520 SSNFTTPITISTSL 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,636
Number of Sequences: 5004
Number of extensions: 33068
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)