Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2043
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728...    30   0.96 
03_06_0546 - 34646946-34647289,34647542-34647608                       30   1.3  
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385...    29   1.7  
06_02_0001 - 10431189-10432634                                         28   5.1  
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357...    27   6.8  
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    27   8.9  
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    27   8.9  
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...    27   8.9  

>06_03_0794 -
           24671955-24672362,24672469-24672505,24672804-24672858,
           24674044-24674167,24674670-24674903
          Length = 285

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 370 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTKPFV 477
           +PQ   +  A     TP  +  SGP G TTYTK FV
Sbjct: 2   TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37


>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 180 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 269
           SFH  E+ CC CCV+  C + C   +   HL
Sbjct: 79  SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108


>08_01_0438 +
           3852221-3853207,3853544-3854757,3855258-3855330,
           3856715-3856843,3857060-3857103,3857186-3857265,
           3857342-3857396,3857712-3857919
          Length = 929

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 180 SFHQEE--VCCTCCVYRSCIILCYFSRR 257
           SF+ E+  V C+CC++ SC ILC  + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614


>06_02_0001 - 10431189-10432634
          Length = 481

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 418 PNTYIASGPLGATTYTKPFVQTVPIALTGSL 510
           P   ++SG LGA  +T+P V  VP A  G L
Sbjct: 4   PPAVLSSGELGARGHTRPHVVFVPSAGMGHL 34


>07_01_0472 -
           3571989-3572042,3572126-3572233,3572251-3572478,
           3573007-3573111,3573310-3573399,3573765-3574256
          Length = 358

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = +1

Query: 295 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 447
           STS+   +P ++       P +Y+A+ + K SP+W +  +  S    +    T   SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285

Query: 448 GATTYT 465
           G ++ T
Sbjct: 286 GTSSAT 291


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 352 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTKP 471
           +F+ + SPQ P    AP +      Y +  P G T+Y  P
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP 494


>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 439 GPLGATTYTKPFVQTVPIALTGSLPV 516
           GP+G   +  PF+ + P+  TG  P+
Sbjct: 780 GPIGVKKHLAPFLPSHPVITTGGFPL 805


>01_06_0461 +
           29553709-29554905,29555051-29555296,29555387-29555464,
           29555557-29555657,29555745-29555940,29556022-29556147,
           29556231-29556416,29556921-29557034,29557522-29557674,
           29558287-29558475,29558568-29558645,29558728-29558853,
           29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 439 GPLGATTYTKPFVQTVPIALTGSLPV 516
           GP+G   +  PF+ + P+  TG  P+
Sbjct: 782 GPIGVKKHLAPFLPSHPVITTGGFPL 807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,182
Number of Sequences: 37544
Number of extensions: 251692
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)