Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2042
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.58 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.58 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.58 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.5  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 23  SGLHLQPNATRLDPPAPYHQND*EYGRRRDSSTGEDPD 136
           SG HLQ    RL+      Q+D + G+   ++  ED D
Sbjct: 164 SGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDD 201


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 23  SGLHLQPNATRLDPPAPYHQND*EYGRRRDSSTGEDPD 136
           SG HLQ    RL+      Q+D + G+   ++  ED D
Sbjct: 164 SGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDD 201


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 23  SGLHLQPNATRLDPPAPYHQND*EYGRRRDSSTGEDPD 136
           SG HLQ    RL+      Q+D + G+   ++  ED D
Sbjct: 164 SGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDD 201


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 440 KLLDFTSAFEAQDERSLR*RVDGALTNYQILEV*AAGFHAN 318
           K + F+S    +  RSL     GALT + ++     G H N
Sbjct: 351 KKIKFSSFGMLKISRSLLTSFGGALTTFLVILFQYGGIHGN 391


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 243 TGFGGLKTVKIL 278
           TG GGL+ +K+L
Sbjct: 217 TGLGGLQNIKVL 228


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 125 EDPDRKWCY*NTARGNARKIYR 190
           ++PD KW   ++++   R  YR
Sbjct: 223 DEPDHKWKKNDSSKKKTRYYYR 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,767
Number of Sequences: 336
Number of extensions: 2494
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)