Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2042
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    43   3e-05
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   4.2  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   5.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   5.6  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    25   7.4  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +3

Query: 240 LTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSSPKTPFILGFEC 419
           ++GF  LK  +  + P+  +  GEVL+++KA  LN++DLI+ +G      + P + G + 
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDG 68

Query: 420 AGEIEQFGAKCHQF 461
           AG IE+ G     F
Sbjct: 69  AGIIEKVGEDVEGF 82


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 422 W*NRAIWRKMSPILKGATKWWV--FPSTVLGP 511
           W N  I +   P+LK + + W+  + + VLGP
Sbjct: 88  WVNSGISKSFQPVLKTSDELWMSHYQTNVLGP 119


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 457 NFKGGDQVVGLPEYRAWAELVSVP 528
           +FK GD+VV L  + A+A+  +VP
Sbjct: 79  DFKVGDRVVYLTPFGAYAQYTNVP 102


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -2

Query: 448 FAPNCSISPAHSKPKMKGVFGEESMAP*RTIKSWKFRPQAFTRIRTSPSPTVGSGFLSIL 269
           F+P  S+S  H K K +      +      + SW   P    R  +  SP V S +L  +
Sbjct: 495 FSPGTSLSTNHVKTKSRSAHNNSTSPFSTAVSSW-LNP---LRYPSDKSPRVISSYLESV 550

Query: 268 TVLRP 254
            + +P
Sbjct: 551 FISKP 555


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 370 APSTLHRRLLSSWASNALVKSSNLAQNVTNFKGGDQVVGLPEYRAWA 510
           A   + R L+ S A N ++   N+A    NF+ G    G+P+  + A
Sbjct: 242 AVMNMARNLMQSGALNNIMNDPNIANMARNFQSGG---GMPDLSSLA 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,010
Number of Sequences: 5004
Number of extensions: 38769
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)