Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2042
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical ...    39   0.002
Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    37   0.008
Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    37   0.011
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    29   1.7  
Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical p...    28   5.1  
U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical p...    28   5.1  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF067618-4|AAY44003.1|  381|Caenorhabditis elegans Hypothetical ...    27   6.8  
AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical ...    27   6.8  

>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = +3

Query: 225 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSSPKTPFI 404
           MRA V+  FG    ++ ++   P + + +VL+R  A G+N  D  +R G     P  P++
Sbjct: 10  MRAAVVRRFGAPDVIEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYV 69

Query: 405 LGFECAGEIEQFG 443
            G + AG +E  G
Sbjct: 70  PGKDGAGFVELVG 82


>AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical
           protein D2063.1 protein.
          Length = 326

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +3

Query: 228 RAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSSPKTPFIL 407
           RA++   +GG   +K L  P+P   E E+L++++  G+   D+    G      K P I 
Sbjct: 11  RALIFESYGGPLEIKQLPIPQP--NEDELLVKMEYSGICHSDVHTWLGDFHYVSKCPMIG 68

Query: 408 GFECAGEIEQFGAK 449
           G E AG +   G+K
Sbjct: 69  GHEGAGSVISVGSK 82


>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 255 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDL-IVRQGAIDSSP-KTPFILGFECAGE 428
           G+  +++ + P    G  +VL+++   G+   D+  +  GAI S   K P +LG E +G 
Sbjct: 12  GINDLRLEQAPISKPGPRQVLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVLGHESSGV 71

Query: 429 IEQFGAKCHQFXXXXXXXXXXXVPC 503
           + + G++   F           +PC
Sbjct: 72  VSEIGSEVKGFKVGDRIAMEPGLPC 96


>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 228 RAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSSPKTPFIL 407
           RA+V   + G   +++ + P P+  + E+L++++  G+   DL V  G +      P + 
Sbjct: 10  RALVFDTWNG--PLEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVG 67

Query: 408 GFECAGEIEQFG 443
           G E AG + Q G
Sbjct: 68  GHEGAGSVVQIG 79


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 521  DTSSAQARYSGRPTTWSPPLKLVTFCAKLLDFTSAFEAQDERSLR*RVDGALTNYQI 351
            + S A+  Y+G   TW+ PLK      K      A  + D ++ +  VDG+ TN+ I
Sbjct: 964  ELSIAEVMYNGAVITWNSPLKQNGIVTKYTIRHWAASSPDVKT-KHEVDGSTTNFTI 1019


>Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK829.7 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 258 LKTVKIL-KKPEPTVGEGEVLIRVKACGLNFQDLIV---RQGAIDSSPK-TPFILGFECA 422
           L+ VK   ++P P V      ++V   G+   D  V   +Q  I +  K T    G+E +
Sbjct: 16  LREVKFFDEEPIPDVPPKGARVKVCYAGVCLTDREVSNTKQARITNGIKDTSLFPGYEVS 75

Query: 423 GEIEQFGAKC 452
           G +E FGA+C
Sbjct: 76  GIVESFGAEC 85


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 101 RRRDSSTGEDPDRKWCY*NTARGNARKIYRGEKG 202
           +RRD+  G++   +W + N A+   R +Y+G +G
Sbjct: 241 QRRDTGEGDELVARWYFDNQAKECRRFLYKGIRG 274


>U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK354.2a protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 316 RTSPSPTVGSGFLSILTVLRPPKPVS 239
           RT+P  T  +GF  +LTV+R PK V+
Sbjct: 262 RTTPETT--AGFFDLLTVIREPKDVA 285


>U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical
           protein ZK354.2b protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 316 RTSPSPTVGSGFLSILTVLRPPKPVS 239
           RT+P  T  +GF  +LTV+R PK V+
Sbjct: 262 RTTPETT--AGFFDLLTVIREPKDVA 285


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 412  KPKMKGVFGEESMAP*RTIKSWKFRPQAFTRIRTSPSPTVGSGFLSILTVLR 257
            KP  + V  +E  AP RTI+ WK  P         P PT  S F++ L +L+
Sbjct: 1239 KPSGETVLNQEKEAPKRTIRRWKPPP---------PDPTSPS-FIAFLAILK 1280


>AF067618-4|AAY44003.1|  381|Caenorhabditis elegans Hypothetical
           protein F56H1.6 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
 Frame = +3

Query: 267 VKILKKPEPTVGE-GEVLIRVKACGLNFQDLIVRQG----------AIDS----SPKTPF 401
           V++ + P P + + G+VL++VKA  +N  D+ + QG           I+S    + + P 
Sbjct: 29  VELKEVPLPVINKPGQVLLKVKAASVNPIDVDMSQGYGREFLGTWKKIESCDAAASRFPL 88

Query: 402 ILGFECAGEIEQFGAKCH 455
           I G +C   +E  G   H
Sbjct: 89  IPGRDCTAVVESVGGDVH 106


>AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.9 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 316 RTSPSPTVGSGFLSILTVLRPPKPVS 239
           RT+P  T  +GF  +LT++R PK V+
Sbjct: 262 RTTPETT--AGFFDLLTIIREPKDVA 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,729,904
Number of Sequences: 27780
Number of extensions: 228845
Number of successful extensions: 535
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)