Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2042
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.8  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   6.3  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 503 ARYSGRPTTWSP 468
           A ++  PTTWSP
Sbjct: 511 APFNASPTTWSP 522


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 234 RRAFPWAVGSHPFSPR 187
           RR FP   G  PF+P+
Sbjct: 31  RRPFPTFPGQGPFNPK 46


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 234 RRAFPWAVGSHPFSPR 187
           RR FP   G  PF+P+
Sbjct: 17  RRPFPTFPGQGPFNPK 32


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 458 ILKGATKWWVFPSTVLGPSWC 520
           +L  +  W VF   + G  WC
Sbjct: 118 VLPFSATWEVFKVWIFGDLWC 138


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 333  CGLNFQDLIVRQGAIDSSPKTPFI 404
            CG  +Q  +     I SSP +P +
Sbjct: 1467 CGNTYQLYLTSHNKIGSSPSSPVL 1490


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 333  CGLNFQDLIVRQGAIDSSPKTPFI 404
            CG  +Q  +     I SSP +P +
Sbjct: 1463 CGNTYQLYLTSHNKIGSSPSSPVL 1486


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 347 PRFDSSSGRHRLFTEDSFHLGLRMRW*NRAIWRKMSPILKG 469
           P +     ++ +F  +   LG   R    A W +  P LKG
Sbjct: 546 PSYSRDEPKYFIFDAEKTGLGKGPRTTYCAFWNEFLPKLKG 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,797
Number of Sequences: 438
Number of extensions: 2850
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)