Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2041
         (554 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   291   7e-78
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   176   3e-43
UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2; Tricho...    35   1.1  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   4.5  
UniRef50_Q8TW82 Cluster: Uncharacterized membrane protein specif...    32   7.8  
UniRef50_Q5UP56 Cluster: Uncharacterized protein L594; n=1; Acan...    32   7.8  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  291 bits (714), Expect = 7e-78
 Identities = 128/167 (76%), Positives = 150/167 (89%)
 Frame = +1

Query: 52  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 231
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 232 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 411
           GKNQKLTLFKEIR+VKPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 412 LKPTRPNRCYKFLG*HGLRWEEDYVPHEVIRIVEPSYVGMNNEYRIS 552
           ++PTRPNRC++FL  H LR + +YVPH+VIRIVEPSYVG NNEYRIS
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRIS 174


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  176 bits (428), Expect = 3e-43
 Identities = 74/156 (47%), Positives = 112/156 (71%)
 Frame = +1

Query: 67  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 246
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 247 LTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 426
           + +F+E+R++K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE  DV+L     P +
Sbjct: 71  MVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIRCTPNK 130

Query: 427 PNRCYKFLG*HGLRWEEDYVPHEVIRIVEPSYVGMN 534
            NR Y+FL  HGLR +ED+VP + IR++EP Y+  N
Sbjct: 131 SNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYLQGN 166


>UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2;
           Trichomonas vaginalis G3|Rep: CMGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 340

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +1

Query: 130 NAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD-TMKLIVN 306
           N ++     +H+  E QW+L DNY + +   +G GK    T+FK +   + +  +K++V 
Sbjct: 20  NQQKGPEWYDHKSYEPQWNLPDNYSLIKK--VGRGKYS--TVFKAVHKRRTECAIKILVP 75

Query: 307 WSGKEFLRE 333
              K +LRE
Sbjct: 76  LDPKRYLRE 84


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -2

Query: 109  FCNIYCRTR----KYARWWGCMNNSAY 41
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


>UniRef50_Q8TW82 Cluster: Uncharacterized membrane protein specific
           for M.kandleri, MK-9 family; n=1; Methanopyrus
           kandleri|Rep: Uncharacterized membrane protein specific
           for M.kandleri, MK-9 family - Methanopyrus kandleri
          Length = 419

 Score = 32.3 bits (70), Expect = 7.8
 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 253 G*VFGFCPV--LKRDLRQP-CSCLEDPIASPLVHVRLGASCAWR 131
           G V G  P+  L RDL  P  S L  PIA+PL  V L    AWR
Sbjct: 316 GVVLGMIPIATLVRDLLPPDLSLLSAPIAAPLAGVLLALPIAWR 359


>UniRef50_Q5UP56 Cluster: Uncharacterized protein L594; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: Uncharacterized
           protein L594 - Mimivirus
          Length = 390

 Score = 32.3 bits (70), Expect = 7.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 79  TYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDN---YMVAEDP 219
           +Y+YD  Y  N+  LIKN   K  ++  +++ +  + LD    Y+V +DP
Sbjct: 271 SYIYDMNYRSNINDLIKNKPSKPTIIFIKEKLRLGEYLDTKYIYLVHDDP 320


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,259,745
Number of Sequences: 1657284
Number of extensions: 13013255
Number of successful extensions: 36618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36556
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)