Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2040
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          27   0.051
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           27   0.051
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   7.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   7.7  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 0.051
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +1

Query: 217 YGSSRLVPPPRYPASSWRC---TAPP 285
           Y +++ +PP  YP S W C    APP
Sbjct: 36  YENNQALPPITYPPSDWNCPQYNAPP 61


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 0.051
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +1

Query: 217 YGSSRLVPPPRYPASSWRC---TAPP 285
           Y +++ +PP  YP S W C    APP
Sbjct: 27  YENNQALPPITYPPSDWNCPQYNAPP 52


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 348 SPFGGRMFEA 319
           SP+GG+MFEA
Sbjct: 399 SPYGGQMFEA 408


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 324 QTFALQMGNGEEEGDP 371
           Q+F L  GN  ++G P
Sbjct: 872 QSFTLTKGNNHDQGVP 887


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 6   KQQNMCEYC 32
           +Q+N C+YC
Sbjct: 133 RQRNRCQYC 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,568
Number of Sequences: 336
Number of extensions: 1918
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)