Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2040
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   3.2  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    25   3.2  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   5.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   5.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   7.4  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    24   7.4  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    24   9.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     24   9.8  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 217  YGSSRLVPPPRYPAS 261
            +G S++VPPP+ PA+
Sbjct: 1003 HGGSQIVPPPKQPAN 1017


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 160 LFT*WRGPGDSRSGRKAPRYGSSRL 234
           LFT W+ P  S +G K  + G  RL
Sbjct: 25  LFTGWKDPALSETGIKEAKLGGERL 49


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 157 DDTPEFLENLRQLSQNFITNHIKHNCRNI 71
           +DTPE   ++   S  F+T++I +   NI
Sbjct: 707 EDTPEHATDMEVFSVEFLTSYITYARNNI 735


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 154 DTPEFLENLRQL-SQNFITNHIKHNCRNIIHLSINR*TLLIEQYSHI 17
           + P  L  L QL S N  +N I   CR   H+S++   +L+   +H+
Sbjct: 370 EIPYALGELPQLCSLNLASNKIT-GCRTFYHISLSHLQILVLSRNHL 415


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 211  PRYGSSRL-VPPPRYPASSWRCTAPPGCSL*AQSSMDSLKHSPSK 342
            PR GSS   VP P     +   T PP  S  +Q S D L  SP +
Sbjct: 1023 PRSGSSSSGVPAPNLTPVNVPPTPPPRKSSASQRSGDLLASSPEE 1067


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 187 DSRSGRKAPRYGSSRLVPPPRY 252
           + R   K  +Y +S++VPPP +
Sbjct: 222 EDRERYKKTKYNASQIVPPPNW 243


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 107 HNKPHKTQLSQYYSLIDK 54
           H +PHK    QY  L+DK
Sbjct: 172 HAQPHKLTEKQYDELVDK 189


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 136 ENLRQLSQNFITNHIKHNCRNIIHLSINR 50
           E+L  L      +H+ H C+   + S+NR
Sbjct: 238 ESLMSLEPEVRQSHVWHKCKKWAYYSLNR 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,298
Number of Sequences: 5004
Number of extensions: 30554
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)