Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2040
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   9.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   9.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 16  ICVNIAQSKVFIYLSISE 69
           +C+NI  S+   +L ISE
Sbjct: 269 LCINILLSQTMFFLLISE 286


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 6   KQQNMCEYC 32
           +Q+N C+YC
Sbjct: 157 RQRNRCQYC 165


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 6   KQQNMCEYC 32
           +Q+N C+YC
Sbjct: 157 RQRNRCQYC 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,481
Number of Sequences: 438
Number of extensions: 2458
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)