Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2038
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.14
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 1.8
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 26 3.1
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 4.1
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 26 4.1
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 26 4.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 4.1
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.4
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 5.4
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 7.1
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 25 9.4
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.4
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -3
Query: 505 GSVHSSAQNFIPSLGSRSILHAFSMTDLLARSATPFCCGLSAIVFWCWMPFFLRNS*NSP 326
G V +++ S+ + +++H + L + C G I C M F RNS N
Sbjct: 31 GIVFLLVLSYLFSIEAETLMHDLVGSGLTGKQVAKTCLGAVVIYAVCLMNIFFRNSENCF 90
Query: 325 IYSPPLAV 302
YS L+V
Sbjct: 91 KYSMNLSV 98
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 533 LGGLRFLRIRQCSQLSPKFHSQPRIPQHTPCLLYDGPIGPFSNTILLRTIRNSF 372
LGGL+FL++ +L+P+ + +H P F N +LLRT+ N +
Sbjct: 658 LGGLKFLQLNPLPELTPR----KVLLEHVPLQAI-----IFQNKLLLRTLENRY 702
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +3
Query: 210 FFEYKNETFRYFQQFKAL 263
++EY+N+ F Y +FK++
Sbjct: 295 YYEYENDVFHYLSEFKSV 312
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 4.1
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 422 IGPFSNTILLRTIRNSFLVLDAI-LLEKFLKLTHILTAPSSPKYF*FLSRFFLNKSFELL 246
IGP L+R N+F VL A+ + EK++ T + + K F N+ F +
Sbjct: 383 IGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTDYIKKFLTAKKL-FTDLPSNNELFSFI 441
Query: 245 -EIPKSFIFVFKK*TYCFLEKSSMKL 171
IPK F+ + TY LEK +++
Sbjct: 442 HNIPKEFLHLSDS-TYLDLEKQVLRI 466
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 244 KYRKVSFLYSKNKHIASWRSHQ*NLENT*HH*MKGPEGDHKGHSL 110
K +KVS Y + + + +SHQ + H M G G HK SL
Sbjct: 54 KRQKVSEPYFRGETERNVKSHQDRAASIYHEAMNGASGIHKQMSL 98
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 263 KSFELLEIPKSFIFVFKK*TYCFLEKSSMKLRKY 162
K F L IPKS + KK LEK +M +++Y
Sbjct: 552 KYFALKMIPKSSLDSLKKIKGLLLEKRNMHIQRY 585
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 387 SPQQNGVAERANRSVIEKAWSML 455
S +NG+ ++ RSV ++AWS +
Sbjct: 420 SKNENGIYDKKARSVSDEAWSFI 442
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 383 RNSFLVLDAILLEKFLKLTHILTAPSSPKYF 291
R SF+ L IL E FLK T P KYF
Sbjct: 174 RQSFISLLQILPEPFLKSQLSHTLPVGSKYF 204
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/72 (20%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +3
Query: 240 YFQQFKALVEKETGKELKILRTARG----GEYMGEFQEFLKKNGIQHQKTIADSPQQNGV 407
YF+Q K +E E++ + E + EF+E + I+ ++++++SPQ++ +
Sbjct: 67 YFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESML 126
Query: 408 AERANRSVIEKA 443
+ + + + +A
Sbjct: 127 EKVSKKPKVSEA 138
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 313 PLAVLSIFNSFPVSFSTRALNCWKY 239
PL +I+ ++PV+ NCW Y
Sbjct: 155 PLDASTIYQTYPVADGFCKWNCWPY 179
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 329 THILTAPSSPKYF*FLSRFFLNKSFELLEI 240
T IL SS +F F+S F+ SF+ LEI
Sbjct: 75 TEILYNDSSLLWFLFVSLCFITLSFQSLEI 104
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 301 LSIFNSFPVSFSTRALNCWKYRKVS 227
+SIF +FP++ S + + W KV+
Sbjct: 781 MSIFEAFPIACSLQQIEHWVNEKVA 805
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,306
Number of Sequences: 5004
Number of extensions: 49063
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -