Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2038
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013152-1|AAH13152.1|  443|Homo sapiens transmembrane protein 5...    29   7.8  
BC002596-1|AAH02596.1|  416|Homo sapiens TMEM5 protein protein.        29   7.8  
AB015633-1|BAA76500.1|  443|Homo sapiens type II membrane protei...    29   7.8  

>BC013152-1|AAH13152.1|  443|Homo sapiens transmembrane protein 5
           protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
 Frame = +3

Query: 342 FLKKNG--IQHQKTIADSPQQN---------GVAERANRSVIEKAWSMLRDPR 467
           FLK+NG  ++    I DSP  N         GVA   N  V+E +WSML D R
Sbjct: 214 FLKRNGGFVELLFIIYDSPWINDVDVFQWPLGVATYRNFPVVEASWSMLHDER 266


>BC002596-1|AAH02596.1|  416|Homo sapiens TMEM5 protein protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
 Frame = +3

Query: 342 FLKKNG--IQHQKTIADSPQQN---------GVAERANRSVIEKAWSMLRDPR 467
           FLK+NG  ++    I DSP  N         GVA   N  V+E +WSML D R
Sbjct: 214 FLKRNGGFVELLFIIYDSPWINDVDVFQWPLGVATYRNFPVVEASWSMLHDER 266


>AB015633-1|BAA76500.1|  443|Homo sapiens type II membrane protein
           protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
 Frame = +3

Query: 342 FLKKNG--IQHQKTIADSPQQN---------GVAERANRSVIEKAWSMLRDPR 467
           FLK+NG  ++    I DSP  N         GVA   N  V+E +WSML D R
Sbjct: 214 FLKRNGGFVELLFIIYDSPWINDVDVFQWPLGVATYRNFPVVEASWSMLHDER 266


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,884,393
Number of Sequences: 237096
Number of extensions: 1732192
Number of successful extensions: 3662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3662
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)