Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2038
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41038-2|AAX88827.1| 635|Caenorhabditis elegans Serotonin/octop... 29 2.1
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 29 2.1
AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin rec... 29 2.1
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 29 2.1
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 29 2.8
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 29 2.8
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 29 2.8
U55364-10|AAA97975.1| 103|Caenorhabditis elegans Hypothetical p... 27 8.5
AF040652-8|AAK84566.1| 402|Caenorhabditis elegans Hypothetical ... 27 8.5
>U41038-2|AAX88827.1| 635|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform b
protein.
Length = 635
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -3
Query: 481 NFIPSLGSRSILHAFSMTDLLARSATPFCCGLSAIVFWCWMPFFLRN 341
NF +G RS L + AT + A F CW PFF N
Sbjct: 298 NFANKVGRRSSLQTATQDLANEHKATRVLAVVFACFFICWTPFFFIN 344
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -3
Query: 481 NFIPSLGSRSILHAFSMTDLLARSATPFCCGLSAIVFWCWMPFFLRN 341
NF +G RS L + AT + A F CW PFF N
Sbjct: 346 NFANKVGRRSSLQTATQDLANEHKATRVLAVVFACFFICWTPFFFIN 392
>AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin
receptor protein.
Length = 635
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -3
Query: 481 NFIPSLGSRSILHAFSMTDLLARSATPFCCGLSAIVFWCWMPFFLRN 341
NF +G RS L + AT + A F CW PFF N
Sbjct: 298 NFANKVGRRSSLQTATQDLANEHKATRVLAVVFACFFICWTPFFFIN 344
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -3
Query: 481 NFIPSLGSRSILHAFSMTDLLARSATPFCCGLSAIVFWCWMPFFLRN 341
NF +G RS L + AT + A F CW PFF N
Sbjct: 346 NFANKVGRRSSLQTATQDLANEHKATRVLAVVFACFFICWTPFFFIN 392
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 255 KALVEKETGKELKI---LRTARGGEYM-GEFQEFLKKNGIQHQKTIADSPQQNGVAERAN 422
KA VE+ E +I L T +G E++ G F +F I+H T + + NG ER N
Sbjct: 1667 KAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFN 1726
Query: 423 RSVI 434
++++
Sbjct: 1727 KTIM 1730
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 255 KALVEKETGKELKI---LRTARGGEYM-GEFQEFLKKNGIQHQKTIADSPQQNGVAERAN 422
KA VE+ E +I L T +G E++ G F +F I+H T + + NG ER N
Sbjct: 1570 KAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFN 1629
Query: 423 RSVI 434
++++
Sbjct: 1630 KTIM 1633
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 255 KALVEKETGKELKI---LRTARGGEYM-GEFQEFLKKNGIQHQKTIADSPQQNGVAERAN 422
KA VE+ E +I L T +G E++ G F +F I+H T + + NG ER N
Sbjct: 1581 KAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFN 1640
Query: 423 RSVI 434
++++
Sbjct: 1641 KTIM 1644
>U55364-10|AAA97975.1| 103|Caenorhabditis elegans Hypothetical
protein F21C10.5 protein.
Length = 103
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 329 THILTAPSSPKYF*FLSRFFLN 264
T+I+ PS+P F LS+FF N
Sbjct: 82 TYIINQPSNPVMFVLLSQFFFN 103
>AF040652-8|AAK84566.1| 402|Caenorhabditis elegans Hypothetical
protein T05A8.7 protein.
Length = 402
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 325 IYSPPLAVLSIF-NSFPVSFSTRALNCWKYRKVSFLYSKNKHIASWR 188
+ S L++L + N V F + W R+ LYS++ + SW+
Sbjct: 83 VSSVGLSILQVLANKVLVDFVEKRSLYWSLRRFMALYSESSELVSWK 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,313
Number of Sequences: 27780
Number of extensions: 266702
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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