Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2037
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 29 0.28
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 0.86
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 27 2.0
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 26 3.5
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 3.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.1
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 8.0
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 8.0
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 8.0
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.0
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 29.5 bits (63), Expect = 0.28
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 116 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYIK 253
+++ +LSG I + GN S K+G+PQGSIL FL Y++
Sbjct: 680 KMLKEHLSGHIVKI---GN--SQYLQKVGIPQGSILSSFLCHFYME 720
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 0.86
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 32 DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQ 211
D+ FD + H+ L+ L ++LI L+ T NR + G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTE----NRYKYDIV--GTPQ 423
Query: 212 GSILGPFLFLIYI 250
GSI+ P L IY+
Sbjct: 424 GSIVSPILANIYL 436
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 11 DCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQ 151
D LG F + C+E LVR G++D EL ++ S Q
Sbjct: 34 DTLGTFNPAALPLPCLEKTMLVRSFDAQGLKDAVDELESNLKSSEDQ 80
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.8 bits (54), Expect = 3.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -3
Query: 62 VQHSQMLWISHRKFQDNH 9
V+H++++W+ RK D H
Sbjct: 523 VEHNKLMWLKDRKMGDGH 540
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 3.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 273 IESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVYW--FRINNLSLNSKKTKCIKF 446
+ R + ++ + + L RQL + E+ND S + + F ++NL L +C+
Sbjct: 184 LNDREKTLMIQEKKNHLIHSLRQLLAFSEINDFPSEIRSYLEFILSNLDL-----ECLTL 238
Query: 447 TLKCIKSSL 473
LK IK L
Sbjct: 239 CLKIIKGIL 247
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 238 SNIYQTICPSFLLSPDTRSYYSQMIHLYYLKLND 339
+ ++ IC + L+ + S +M+H +LKL D
Sbjct: 1336 AQMFNIICKTVLIDMNVLSAQKEMLHTLWLKLMD 1369
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 145 DTNSRCERK*IFRHHVENGCTSRFHFGSFFISNIYQTI 258
D NSRC+ K F H N C H + IS+IY+ +
Sbjct: 350 DCNSRCDTKYHFLGHKCNSC----HSYNTCISSIYKPL 383
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 206 VHPFSTWCLKIYFLSHLLFVSFLINRK 126
VHP + LKIY L HL + F N++
Sbjct: 201 VHPNNVTELKIYILKHLPVLVFNPNKE 227
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 95 HSDVVSSPMFHVQHSQML 42
H+D+V+ FH QH +L
Sbjct: 234 HTDIVNDVQFHPQHEALL 251
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 195 FNVVPEDLFPFTSTVCILPDK*EVISSNAPSLIP 94
+NV E+ F + +C++ D E+ SN +L+P
Sbjct: 137 YNVAQEEFF---AILCVVCDSLEIYHSNLSTLLP 167
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +1
Query: 220 FGSFFISNIYQTICPSFLLSPDTRSY---YSQMIHLYYLKLNDNYKS 351
FGSFFIS + SF P S+ HL L N Y++
Sbjct: 259 FGSFFISRLASQFLVSFQTLPSFFSFPLVTDNWQHLAALPFNSTYET 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,906
Number of Sequences: 5004
Number of extensions: 42922
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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