Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2037
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    36   0.023
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    31   0.37 
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     30   0.86 
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227...    29   1.5  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    29   2.6  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    29   2.6  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +2

Query: 32  DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQ 211
           D  KAFD +EH  ++  + H G     +E +    S     V + G   +    + GV Q
Sbjct: 457 DFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQ 516

Query: 212 GSILGPFLFLI 244
           G  L   LF++
Sbjct: 517 GVPLSLLLFVL 527


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +2

Query: 32  DLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQ 211
           D+ KA+D +E   L   L   G     +  +   ++     + + G  +       G+ Q
Sbjct: 258 DMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIRQ 317

Query: 212 GSILGPFLFLI 244
           G  + P+LFL+
Sbjct: 318 GDPISPYLFLL 328


>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 312 YHLRIIRPRVGTQ*EARANRLIYIRNKKGPKMEP*GTPIFNVVPEDL 172
           Y   ++R R+  Q   R +     R +KG K EP  +PI   VP+DL
Sbjct: 88  YRYELLRRRMEDQSNQRQSSRSRKRKRKGDKKEPEPSPIKVPVPDDL 134


>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
            18122824-18123105,18123159-18123292,18123425-18123508,
            18123611-18123901,18123982-18124314,18124620-18124750,
            18124826-18124930,18125011-18125167,18125248-18125351,
            18125442-18125602,18125800-18126116,18126369-18126650,
            18127011-18127312,18127609-18127699,18127771-18127824,
            18128110-18128186,18128279-18128438,18128545-18128629,
            18129059-18129367,18129514-18129890
          Length = 1507

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 11   DCLGI-FCDLSKAFDCVEHETLVRKLHHYGI 100
            D LGI F D+ K  D  +HE L + L  YGI
Sbjct: 1168 DVLGISFTDVYKNSDLYQHEVLTKSLDSYGI 1198


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 23  IFCDLSKAFDCVEHETLVRKL 85
           +  D+SKAFDCV H+ +++ +
Sbjct: 293 VVADVSKAFDCVSHDMVLKMI 313


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 140 GRIQTVDVKGNRSSGT--TLKMGVPQGSIL 223
           G ++ +D++GNR +GT  TL +GVP   +L
Sbjct: 167 GELRALDLRGNRLNGTLDTLLLGVPNLKLL 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,432
Number of Sequences: 37544
Number of extensions: 230903
Number of successful extensions: 480
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)