Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2037
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 58 4e-09
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 51 4e-07
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 40 7e-04
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 39 0.002
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.021
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 36 0.021
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 36 0.021
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 34 0.048
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 34 0.063
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 31 0.44
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 0.44
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 0.44
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 0.44
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 29 2.4
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 29 2.4
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 28 3.1
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 28 3.1
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ... 27 5.5
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 27 5.5
Z83105-9|CAB05489.1| 199|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 57.6 bits (133), Expect = 4e-09
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 41 KAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGS 217
KAFD V H L++KLH +GI +LS R +V V + + GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 218 ILGPFLFLIYIKRFALA 268
+ GPFLFLI+I L+
Sbjct: 62 VSGPFLFLIFINSLLLS 78
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 51.2 bits (117), Expect = 4e-07
Identities = 29/76 (38%), Positives = 39/76 (51%)
Frame = +2
Query: 23 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 202
I+ D SKAFD + H+ L+ KL L + +LS R V + SS G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 203 VPQGSILGPFLFLIYI 250
VPQG++L P LF IY+
Sbjct: 77 VPQGAVLSPLLFGIYV 92
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 40.3 bits (90), Expect = 7e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 LSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGN-RSSGTTLKMGVPQ 211
LS AFD V HE L+ KL+ + + +S + +V V + S ++G P+
Sbjct: 894 LSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPR 953
Query: 212 GSILGPFLFLIYI 250
GS F+FL++I
Sbjct: 954 GSESRQFMFLVFI 966
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 32 DLSKAFDCVEHETLVRKLHH-YGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVP 208
DL AFD V + L L GI + +YL R+ + S TL GVP
Sbjct: 475 DLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVP 534
Query: 209 QGSILGPFLFLIYIK 253
QGS++ P LF Y+K
Sbjct: 535 QGSVISPNLFTFYLK 549
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 35.5 bits (78), Expect = 0.021
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +2
Query: 23 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 202
+F D KAFD VEH+ + + L G DGA + T +R + G
Sbjct: 518 VFIDFKKAFDTVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 576
Query: 203 VPQGSILGPFLF 238
V QG + P LF
Sbjct: 577 VRQGDPISPNLF 588
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 35.5 bits (78), Expect = 0.021
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +2
Query: 23 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 202
+F D KAFD VEH+ + + L G DGA + T +R + G
Sbjct: 689 VFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 747
Query: 203 VPQGSILGPFLF 238
V QG + P LF
Sbjct: 748 VRQGDPISPNLF 759
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 35.5 bits (78), Expect = 0.021
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +2
Query: 23 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 202
+F D KAFD VEH+ + + L G DGA + T +R + G
Sbjct: 428 VFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 486
Query: 203 VPQGSILGPFLF 238
V QG + P LF
Sbjct: 487 VRQGDPISPNLF 498
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 34.3 bits (75), Expect = 0.048
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 80 KLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPFLFLIYIKR 256
KL +G+ +L R +V + S + + GVPQGS+ GP LF+++I
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 257 FAL 265
+
Sbjct: 899 LLI 901
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.063
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +2
Query: 23 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 202
+F D KAFD VEH+ + + L G + ++L+ T R + G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYK-NCTTNFTPFLRPITVPVTKG 98
Query: 203 VPQGSILGPFLF 238
V QG + P LF
Sbjct: 99 VRQGDPISPNLF 110
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 31.1 bits (67), Expect = 0.44
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 110 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 9
H P YH D H QHSQ L SH K NH
Sbjct: 55 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 89
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 31.1 bits (67), Expect = 0.44
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 110 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 9
H P YH D H QHSQ L SH K NH
Sbjct: 1695 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 1729
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 31.1 bits (67), Expect = 0.44
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 110 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 9
H P YH D H QHSQ L SH K NH
Sbjct: 1796 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 1830
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 31.1 bits (67), Expect = 0.44
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 110 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNH 9
H P YH D H QHSQ L SH K NH
Sbjct: 1796 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNH 1830
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 2 ESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGI 100
E+HDC DCV H TL + H G+
Sbjct: 236 ETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 268
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 2 ESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGI 100
E+HDC DCV H TL + H G+
Sbjct: 262 ETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 294
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 399 INNLSLNSKKTKCIKFTLKCIKSSLNGET 485
IN +S+ + ++C+ L+C+ LNGET
Sbjct: 688 INKMSIEQELSRCVTIALRCV---LNGET 713
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 399 INNLSLNSKKTKCIKFTLKCIKSSLNGET 485
IN +S+ + ++C+ L+C+ LNGET
Sbjct: 644 INKMSIEQELSRCVTIALRCV---LNGET 669
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 385 TTHEIASFTSS*TCNCRLILNNKDVSSANNT 293
TTH + + T+ T +CRL+L +K ++ N++
Sbjct: 489 TTHHVINSTTLFTAHCRLMLLSKSLTIQNDS 519
>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 7 protein.
Length = 1887
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 175 IFRHHVENGCTSRFHFGSFFISNIYQTICPSFLLSPDTRSY 297
+FRH T FGS +++ FL+ P R Y
Sbjct: 129 VFRHRGYRAATGGTRFGSAEVASSIDAFLTKFLVQPQDREY 169
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 248 YILEIKKDPKWNLEVHPFSTWCLKIYFLSH 159
++ E+ D W HP +++CL FL H
Sbjct: 199 HLAELYADLSWRFYTHPPTSFCLARVFLRH 228
>Z83105-9|CAB05489.1| 199|Caenorhabditis elegans Hypothetical
protein F14H3.9 protein.
Length = 199
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 202 CTSRFHFGSFFISNIYQTICPSFLLSPDTRSYYSQM 309
C S+ +F NI++ CPS++L P+ ++ + M
Sbjct: 120 CLSKLRSSNF---NIFKYKCPSYVLQPNDTAFLTSM 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,018,619
Number of Sequences: 27780
Number of extensions: 232600
Number of successful extensions: 598
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -