Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2036
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 240 1e-64
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 231 4e-62
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 125 4e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 108 6e-25
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.4
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 5.4
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 7.2
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 9.5
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.5
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 9.5
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 240 bits (587), Expect = 1e-64
Identities = 103/141 (73%), Positives = 121/141 (85%)
Frame = +1
Query: 67 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 246
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 247 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 426
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 427 RIRKLADQCTGLQGFLIFHSF 489
+IR++AD C+GLQGFL+FHSF
Sbjct: 121 KIRRIADNCSGLQGFLVFHSF 141
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 231 bits (566), Expect = 4e-62
Identities = 104/146 (71%), Positives = 123/146 (84%), Gaps = 5/146 (3%)
Frame = +1
Query: 67 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 231
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 232 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 411
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 412 DLVLDRIRKLADQCTGLQGFLIFHSF 489
D VL+RIR++AD C+GLQGFL+FHSF
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSF 145
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 125 bits (302), Expect = 4e-30
Identities = 60/140 (42%), Positives = 82/140 (58%)
Frame = +1
Query: 67 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 246
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 247 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 426
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 427 RIRKLADQCTGLQGFLIFHS 486
+R+ A+ C LQGF + HS
Sbjct: 119 VVRREAEACDALQGFQLTHS 138
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 108 bits (259), Expect = 6e-25
Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Frame = +1
Query: 70 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 249
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 250 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 423
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 424 DRIRKLADQCTGLQGFLIFHS 486
D I + AD L+GF + HS
Sbjct: 120 DMIDREADGSDSLEGFSLLHS 140
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 146 STASSLMARCPQTRPSGVETILSTLSSARPELAST 250
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 165 WPDAHRQDHRGWRRFFQHFLQR 230
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 56 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 178
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 303 PDLINNSRFKIDEDSTGYVLASSGLAEESVERI 205
P ++NN FK++E ++L S + + +++I
Sbjct: 344 PPILNNLIFKLEESPQIWILIISRFSSDGIDKI 376
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 120 ITDLDSGLANVYRDALTHFDLSF 52
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 174 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 52
H I+ D L + K + +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 352 KEDAANNYARGHYTIGKEIVDLV 420
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 336 FWMKQLSVCASPDLINNSRF 277
FW+ L++C SP + N +F
Sbjct: 1511 FWISTLAMCISPFIFNPHQF 1530
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 492 PKGVEDQESLQTGTLVSELADSVQNQIYDFLSN 394
P+ + D + L+ + + +V NQ++ LSN
Sbjct: 555 PRSIGDAQKLEILEYLQSQSSTVSNQVFTLLSN 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,361
Number of Sequences: 5004
Number of extensions: 50470
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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