Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2036
(540 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 50 4e-08
AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 43 6e-06
AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 43 6e-06
AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 43 6e-06
AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 43 6e-06
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 24 0.31
AY578812-1|AAT07317.1| 932|Anopheles gambiae wishful thinking p... 26 0.70
AY028784-1|AAK32958.2| 499|Anopheles gambiae cytochrome P450 pr... 23 6.5
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi... 23 8.7
AJ496389-1|CAD43035.1| 103|Anopheles gambiae mannosyl glycoprot... 23 8.7
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote... 23 8.7
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 50.4 bits (115), Expect = 4e-08
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 67 MRECISVHVGQAGVQIGNACWE 132
MRECISVHVGQAGVQIGN CW+
Sbjct: 1 MRECISVHVGQAGVQIGNPCWD 22
Score = 41.1 bits (92), Expect = 2e-05
Identities = 26/68 (38%), Positives = 28/68 (41%)
Frame = +2
Query: 122 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXX 301
P T WS AS+ RCP+TR S ST SS R AST PV
Sbjct: 19 PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRC 78
Query: 302 XXAHTDSC 325
A T SC
Sbjct: 79 APARTASC 86
>AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 43.2 bits (97), Expect = 6e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 385 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 486
HYT G E+VD VLD +RK + C LQGF + HS
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34
>AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 43.2 bits (97), Expect = 6e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 385 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 486
HYT G E+VD VLD +RK + C LQGF + HS
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34
>AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 43.2 bits (97), Expect = 6e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 385 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 486
HYT G E+VD VLD +RK + C LQGF + HS
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34
>AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 43.2 bits (97), Expect = 6e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 385 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 486
HYT G E+VD VLD +RK + C LQGF + HS
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 23.8 bits (49), Expect(2) = 0.31
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 173 CPQTRPSGVETILSTLSSARPELAS 247
C RPS ++ ++ S RP+LA+
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188
Score = 21.8 bits (44), Expect(2) = 0.31
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 116 VMPAGSFTAWSTASSLMARCPQTRPSGV 199
V+ AG F AW TA +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139
>AY578812-1|AAT07317.1| 932|Anopheles gambiae wishful thinking
protein.
Length = 932
Score = 26.2 bits (55), Expect = 0.70
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 537 LHPIRKVNPKSRYLPPKG 484
L + ++NP++R +PPKG
Sbjct: 544 LQEVAQINPRARTMPPKG 561
>AY028784-1|AAK32958.2| 499|Anopheles gambiae cytochrome P450
protein.
Length = 499
Score = 23.0 bits (47), Expect = 6.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 195 GWRRFFQHFLQRDRSWQAR 251
GW + HF QR R W R
Sbjct: 12 GWLWIYLHFNQRYRFWVER 30
>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
channel alpha subunitprotein.
Length = 2139
Score = 22.6 bits (46), Expect = 8.7
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = +1
Query: 271 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 450
D++P + +++G Y F I + ++ G I D ++ + L
Sbjct: 831 DMDPDMEKALKSGNY--FFTATFAIEATMKLIAMSPKYYFQEGWNIFDFIIVALSLLELG 888
Query: 451 CTGLQGFLIFHSFR 492
G+QG + SFR
Sbjct: 889 LEGVQGLSVLRSFR 902
>AJ496389-1|CAD43035.1| 103|Anopheles gambiae mannosyl glycoprotein
transferase protein.
Length = 103
Score = 22.6 bits (46), Expect = 8.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +3
Query: 309 HIQTVVSSRTTYYW*GRCGQQLCPWSLHHW 398
H + +RT +Y RC + C + ++W
Sbjct: 66 HNMGMAFNRTMWYEIVRCARHFCEYDDYNW 95
>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
protein.
Length = 1645
Score = 22.6 bits (46), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 96 PSRSPDR*CLLGALLPGARHPA*WPDAHRQDHR 194
P+ P + L+ +LP + PA P R+D R
Sbjct: 1107 PAVEPAKKTLVATILPNSAKPAQQPPPLRRDAR 1139
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,459
Number of Sequences: 2352
Number of extensions: 13228
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -