Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2035
         (352 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CVC2 Cluster: Chromosome undetermined scaffold_29, wh...    35   0.33 
UniRef50_A7SLA2 Cluster: Predicted protein; n=1; Nematostella ve...    32   2.4  
UniRef50_Q5CSK6 Cluster: Integral membrane protein with 12 or mo...    31   5.4  

>UniRef50_A0CVC2 Cluster: Chromosome undetermined scaffold_29, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_29,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 768

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 45  IAFVLTDDVKVVNYFYDSQKLNKLTMCNYYHTVLHKLLTIRRF--IL*PTTHFILSNAYY 218
           +A +L     ++ + Y    +N   +CN  H V+H    ++R   I+ PT HFI + +++
Sbjct: 388 LAVLLIIGFIILIFVYYVSLINNNMVCNLAHGVIHDKNVLKRIIKIMKPTKHFIKTKSFF 447

Query: 219 REITV 233
           +++ V
Sbjct: 448 QQVEV 452


>UniRef50_A7SLA2 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 675

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +3

Query: 81  NYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PTTHFILSNAYY 218
           N+FY   +L+KL + N +HT LHKLL+   F   P  H +LSN +Y
Sbjct: 236 NFFYT--QLHKL-LSNIFHTQLHKLLS--NFFYTP-LHKLLSNFFY 275



 Score = 31.9 bits (69), Expect = 3.1
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +3

Query: 81  NYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PTTHFILSNAYYREI 227
           N+FY    L+KL + N+++T LHKLL+   F   P  H +LSN +Y ++
Sbjct: 260 NFFYTP--LHKL-LSNFFYTPLHKLLS--NFFYTP-LHKLLSNFFYTQL 302



 Score = 31.5 bits (68), Expect = 4.1
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +3

Query: 81  NYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PTTHFILSNAYY 218
           N+FY    L+KL + N +HT LHKLL+   F   P  H +LSN +Y
Sbjct: 320 NFFYTP--LHKL-LSNIFHTQLHKLLS--NFFYTP-LHKLLSNFFY 359



 Score = 30.7 bits (66), Expect = 7.2
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +3

Query: 81  NYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PTTHFILSNAYY 218
           N+FY    L+KL + N+++T LHKLL+   F   P  H +LSN +Y
Sbjct: 284 NFFYTP--LHKL-LSNFFYTQLHKLLS--NFFYTP-LHKLLSNFFY 323



 Score = 30.3 bits (65), Expect = 9.5
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 81  NYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PTTHFILSNAYYREI 227
           N+FY    L+KL + N+++T LHKLL+    I     H +LSN +Y ++
Sbjct: 200 NFFYTP--LHKL-LSNFFYTPLHKLLS---NIFHTQLHKLLSNFFYTQL 242


>UniRef50_Q5CSK6 Cluster: Integral membrane protein with 12 or more
            transmembrane domains; n=3; Eukaryota|Rep: Integral
            membrane protein with 12 or more transmembrane domains -
            Cryptosporidium parvum Iowa II
          Length = 1566

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 57   LTDDVKVVNYFYD--SQKLNKLTM-CNYYHTVLHKLLTIRRFIL*PTTHFILSNAYYREI 227
            +T D+K+ N+  D  SQ LNKL    +     L   + I++ +L    HF L + YYRE+
Sbjct: 1454 VTGDIKITNFERDIRSQDLNKLEQHLSKAEENLRDTIYIKKLLL--FGHFALYSMYYREL 1511

Query: 228  TVN 236
             ++
Sbjct: 1512 ILH 1514


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,472,345
Number of Sequences: 1657284
Number of extensions: 4094521
Number of successful extensions: 7015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7005
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)