Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2035
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)                 26   9.9  

>SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   FFCSFSDFRCFVRFIAFVLTDDVKVVNYFYDSQKLNKL 116
           FF  F   R F+R IAF     V++  Y+     LN+L
Sbjct: 8   FFIEFETSRDFLRDIAFPNRSKVEIHVYYQKDTNLNEL 45


>SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 103 FWES*K*LTTFTSSVST---KAIKRTKHRKSENEQ 8
           F  S K  T FT ++ T   K +KR + RKS+N+Q
Sbjct: 7   FESSTKLATQFTYAIQTQDEKNLKRKRRRKSQNQQ 41


>SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)
          Length = 424

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 24  FRCFVRFIAFVLTDDVKVVNYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PTTHFIL 203
           F CF  F+ F++         F ++Q  N   + NY + VL  L+      L P  +   
Sbjct: 322 FICFAPFVIFMI---YLTAEKFLNNQDKNSSPLLNYTYFVLTSLI-FSNSCLNPVLYAFQ 377

Query: 204 SNAYYR 221
           S++Y R
Sbjct: 378 SSSYRR 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,405,871
Number of Sequences: 59808
Number of extensions: 127399
Number of successful extensions: 202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)