Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2035
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z82288-7|CAB05326.1|  390|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    27   5.0  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      26   6.6  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    26   6.6  

>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical protein
            F31E3.4 protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 57   LTDDVKVVNYFYDSQKLNKLTMC---NYYHTVLHKLLTIRRFIL*PTTHFILSNAYYREI 227
            LTDDV+VV+Y      + K  +C   +  +   HK L +R  +L       + +A + + 
Sbjct: 956  LTDDVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRMHVLIQRGVTFVGHALHNDF 1015

Query: 228  TV 233
            TV
Sbjct: 1016 TV 1017


>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 30  CFVRFIAFVLTDDVKVVNYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFIL*PT 188
           CF+ FI F+L+D      + YD +KL     C+   T  H  +T +     PT
Sbjct: 6   CFILFIPFILSD------FAYDLEKLTLTHKCDLQCTFNHSEITSKTTEFFPT 52


>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 6   FCSFSDF----RCFVRFIAFVLTDDVKVVNYFYDSQKLNKLTMCNYYHTVLHKL 155
           F SF DF       +   +F++  D+K++ Y Y + +L   T+C+ Y  ++  L
Sbjct: 56  FFSFCDFYMKPHLHITKTSFIVFTDLKLLGYSYFTGQLALATLCSTYGMMITML 109


>Z82288-7|CAB05326.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK896.9 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 42  FIAFVLTDDVKVVNYFYDSQKLNKLTMCNYYHTVLHKLLTIRRFI 176
           F+ +V  D++    Y    Q L  LT   +   VLH+ LTI+++I
Sbjct: 100 FLLYVAVDNLPAATYMVTYQ-LKILTTAAFTVLVLHRRLTIQQWI 143


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 33  FVRFIAFVLTDDVKVVNYFYDSQKLNKLTMCNYYHTVLHK 152
           + RFI      +VKV N  +D  K+  + MC +    + K
Sbjct: 291 YTRFINHSCAPNVKVANISWDYDKIQLIHMCFFTDKAIRK 330


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96   SQKLNKLTMCNYYHTVLHKL 155
            + K   L +C  YHT++HKL
Sbjct: 1414 ANKEEVLRLCERYHTIMHKL 1433


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96   SQKLNKLTMCNYYHTVLHKL 155
            + K   L +C  YHT++HKL
Sbjct: 1414 ANKEEVLRLCERYHTIMHKL 1433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,572,479
Number of Sequences: 27780
Number of extensions: 104796
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)