Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2035
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 350 IKLKVLLDIIINSFR 306
           +KLK++L  I+ +FR
Sbjct: 496 LKLKIVLSTILRNFR 510


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 138 YGNNCTLLIYL 106
           YGNNC + +Y+
Sbjct: 225 YGNNCEIDMYM 235


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 138 YGNNCTLLIYL 106
           YGNNC + +Y+
Sbjct: 22  YGNNCEIDMYM 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,238
Number of Sequences: 438
Number of extensions: 1504
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)