Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2033
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...   176   8e-45
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...   175   2e-44
08_02_0657 - 19749835-19751942,19753123-19753561                      126   8e-30
06_01_0057 - 483710-484309                                             28   5.2  
07_03_0866 - 22134215-22135351                                         27   6.9  
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747...    27   9.1  

>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score =  176 bits (429), Expect = 8e-45
 Identities = 82/134 (61%), Positives = 99/134 (73%)
 Frame = +2

Query: 50  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 229
           +D K   D STAIL RK  PNRL+V+EA +DDNSV+ +    ME+LQLFRGDTVLLKGK+
Sbjct: 11  SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70

Query: 230 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 409
           RK+T+CIVL+DD C + KIRM             DVVS+  CP VKYGKRVHILPIDD+V
Sbjct: 71  RKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 130

Query: 410 EGLTGNLFQSILEP 451
           EG+TGNLF + L+P
Sbjct: 131 EGITGNLFDAFLKP 144


>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score =  175 bits (426), Expect = 2e-44
 Identities = 84/134 (62%), Positives = 99/134 (73%)
 Frame = +2

Query: 50  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 229
           AD K   D STAIL RK  PNRL+V+EA +DDNSVVAL    ME+LQLFRGDTVLLKGK+
Sbjct: 11  ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70

Query: 230 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 409
           RK+T+CIVL+D+ C + KIRM             DVVS+  C  VKYGKRVHILPIDD+V
Sbjct: 71  RKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTV 130

Query: 410 EGLTGNLFQSILEP 451
           EG+TGNLF + L+P
Sbjct: 131 EGITGNLFDAFLKP 144


>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score =  126 bits (305), Expect = 8e-30
 Identities = 61/138 (44%), Positives = 90/138 (65%), Gaps = 5/138 (3%)
 Frame = +2

Query: 71  DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 235
           D STAIL   +K  PNRL+ ++A   V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16  DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75

Query: 236 ETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEG 415
           E VC    D++CPD ++R+             D+V++ PCP+++  KRV + P DDSVEG
Sbjct: 76  EAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEG 135

Query: 416 LTGNLFQSILEPDLIGGL 469
           ++G+LF+  L+P  +  L
Sbjct: 136 ISGDLFEPYLKPYFMDAL 153


>06_01_0057 - 483710-484309
          Length = 199

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 75  YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSK 221
           Y P    ART P  ++   + A    S W F    WS+  S V+T+  S+
Sbjct: 62  YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111


>07_03_0866 - 22134215-22135351
          Length = 378

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 516 HAPPDHEGVVPMESDGKPPIRSGS 445
           HAPP   G V   S+GKPP+  G+
Sbjct: 354 HAPPP--GAVVYSSEGKPPMEGGA 375


>02_03_0273 +
           17173983-17174339,17174423-17174575,17174638-17174700,
           17174943-17175026,17175120-17175242,17175466-17175519,
           17175669-17175764,17176163-17176258,17177179-17177324,
           17178503-17178632,17178697-17179272,17179364-17179462,
           17179535-17179687,17179794-17180558,17181384-17181683
          Length = 1064

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 41  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAK 175
           + MA  + P +L  AI    DRP    +EEA  D +S+V  ++++
Sbjct: 766 SSMALCRPPVELVQAISTVSDRPTISALEEAGDDGHSIVDAAESR 810


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,034
Number of Sequences: 37544
Number of extensions: 308998
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)