Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2031
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   3.7  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    24   4.9  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    24   4.9  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    24   6.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    24   6.5  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    23   8.6  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 QFHIQTDDEDERYFLYQTHNGQY 319
           ++H+  D  DE + +  +HNG+Y
Sbjct: 205 EYHVFHDHSDEVWQISYSHNGRY 227


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 311 HCEFGTGSSARPRHL-FVCGTDRGLVGDCSRLTPLV 207
           HCE+GT       HL F+      +  D S++ PLV
Sbjct: 58  HCEYGTKGITYTNHLQFILTISYLVHWDLSQVKPLV 93


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 126 TLFKSKNKDLLFFNFIHR 73
           T FK KN+++ F N +H+
Sbjct: 420 TPFKGKNRNMTFSNILHK 437


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -1

Query: 299 GTGSSARPRHLFVCGTDRGLVGDCSRLTPLVNC--RQIPTL 183
           GT  + R R +  C     L   C R+ P  NC  R IP L
Sbjct: 9   GTKGTKRHRKITSCRECHRLKLKCDRVWPCENCKKRGIPNL 49


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 217 VRRLQSPTRPRSVPHTN 267
           VR L+SP+RP ++  TN
Sbjct: 203 VRELKSPSRPSALAETN 219


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 85  FYSPTFVFEVIESRTNTPFVNKQSTFTP 2
           +Y+ T+V      + N+  +NK+S F P
Sbjct: 170 YYNKTYVINYSGLKLNSSAINKRSYFYP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,224
Number of Sequences: 5004
Number of extensions: 21848
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)