Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2031
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    30   0.48 
11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    27   3.4  
07_03_0896 + 22373348-22374946                                         27   3.4  
01_01_0719 - 5590272-5590485,5590849-5590910,5590990-5591202,559...    27   4.5  
07_01_0644 + 4805262-4805712,4806173-4806356,4806511-4806613           26   7.8  
02_01_0173 + 1190846-1191134,1191235-1191557,1191645-1191958,119...    26   7.8  

>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 172 TRTSSVGICLQFTSGVRRLQSPTRPRSVPHTNR*RGRALL 291
           T TSS+ +     + +R L SP RP +V    R R RALL
Sbjct: 7   TTTSSLLLLHHPAAAIRSLPSPPRPSAVARPGRSRRRALL 46


>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 191 VFACSSLAALDGYSPQQD---PDQFHIQTDDEDERYF 292
           +F+C  +  L+GY   QD    D+     +DEDE  F
Sbjct: 352 IFSCKEIEILEGYDNDQDEVEEDEDENSHEDEDEDSF 388


>07_03_0896 + 22373348-22374946
          Length = 532

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 266 FVCGTDRGLVGDCSRL--TPLVNCRQIPTLEVLV*AFFITNLGIISRA*LCSSLKIKTYY 93
           FVCG  R +VG C+ +  T LV  R   T+ V    F    +G +S   L  + +  ++ 
Sbjct: 178 FVCGFGRSMVGTCALVLSTELVGKRWRDTVSVA--GFVCFTVGFLSLPALAYTFREASWR 235

Query: 92  FLILFT 75
            + L+T
Sbjct: 236 SMYLWT 241


>01_01_0719 -
           5590272-5590485,5590849-5590910,5590990-5591202,
           5591223-5591295,5591664-5591863,5592484-5592633
          Length = 303

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 317 TVHCEFGTGSSARPRHLFVCGTDRGLVGDCSRL 219
           T+   FG G SAR  HLF+  T  G +   + L
Sbjct: 159 TLRVVFGGGGSARGEHLFLGTTPAGSMAQAAAL 191


>07_01_0644 + 4805262-4805712,4806173-4806356,4806511-4806613
          Length = 245

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 179 LLVLVFACSSLAALDGYSPQQDPDQFH 259
           LL L+   ++ AALD  +P   P+QFH
Sbjct: 6   LLPLLLLAAAAAALDPPTPTPWPEQFH 32


>02_01_0173 +
           1190846-1191134,1191235-1191557,1191645-1191958,
           1192302-1192461
          Length = 361

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 323 DDTVHCEF-GTGSSARPRHLFVC-GTDRGLVGDCSR 222
           DD V CE  G+G SA    L +C G DRGL   C R
Sbjct: 30  DDDVRCEACGSGESAA--ELLLCDGCDRGLHIFCLR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,394,994
Number of Sequences: 37544
Number of extensions: 123744
Number of successful extensions: 290
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)