Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2031
(323 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 29 0.77
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 29 0.77
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 29 0.77
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 29 0.77
AF440516-1|AAL34104.1| 184|Caenorhabditis elegans SKR-15 protein. 28 1.3
AF099917-7|AAC68782.1| 184|Caenorhabditis elegans Skp1 related ... 28 1.3
AL032630-5|CAA21569.2| 165|Caenorhabditis elegans Hypothetical ... 27 3.1
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 25 9.5
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 231 VPNKTPISSTYKQMTRTSATSCTKLTMDSIV 323
+PN ++ Y++MT A+S +KLT+ I+
Sbjct: 44 IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 231 VPNKTPISSTYKQMTRTSATSCTKLTMDSIV 323
+PN ++ Y++MT A+S +KLT+ I+
Sbjct: 44 IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 231 VPNKTPISSTYKQMTRTSATSCTKLTMDSIV 323
+PN ++ Y++MT A+S +KLT+ I+
Sbjct: 44 IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 231 VPNKTPISSTYKQMTRTSATSCTKLTMDSIV 323
+PN ++ Y++MT A+S +KLT+ I+
Sbjct: 44 IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74
>AF440516-1|AAL34104.1| 184|Caenorhabditis elegans SKR-15 protein.
Length = 184
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 LLVLVFACSSLAAL-DGYSPQQDPDQFHIQTDDEDER 286
+ +L + C +A L G SP++ F I TD+EDE+
Sbjct: 128 MTLLTYCCKFIAGLAKGMSPEEMRVFFCIPTDEEDEK 164
>AF099917-7|AAC68782.1| 184|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 15 protein.
Length = 184
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 LLVLVFACSSLAAL-DGYSPQQDPDQFHIQTDDEDER 286
+ +L + C +A L G SP++ F I TD+EDE+
Sbjct: 128 MTLLTYCCKFIAGLAKGMSPEEMRVFFCIPTDEEDEK 164
>AL032630-5|CAA21569.2| 165|Caenorhabditis elegans Hypothetical
protein Y62H9A.5 protein.
Length = 165
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 182 LVLVFACSSLAALDGYSPQQDP 247
L+L AC ++ A DGY DP
Sbjct: 4 LILTVACIAMVAADGYGAASDP 25
>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
protein F43G6.1b protein.
Length = 1069
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 242 LVGDCSRLTPLVNCRQ 195
LVGDC +LTPLV R+
Sbjct: 812 LVGDCKQLTPLVVSRK 827
>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical
protein F43G6.1a protein.
Length = 1105
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 242 LVGDCSRLTPLVNCRQ 195
LVGDC +LTPLV R+
Sbjct: 848 LVGDCKQLTPLVVSRK 863
>Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical
protein T13H5.6 protein.
Length = 475
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 188 TLEVLV*AFFITNLGIISRA*LCSSLKIKTYYFLILFTDFC 66
T+ VL+ ++I G ISR L + L + +FL FT +C
Sbjct: 71 TINVLIFLWYIGVFGEISRPYLSAGLPYSSSFFL-RFTPYC 110
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 304 SLVQEVALVLVICLYVELIGVLLGTV 227
S VQEV +L+ CL+V L ++ G +
Sbjct: 70 SNVQEVIFILLYCLFVALAILICGLI 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,887,423
Number of Sequences: 27780
Number of extensions: 122867
Number of successful extensions: 290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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