Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2031
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   6.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    20   8.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 322 TILSIVSLVQEVALVLVICLYVELIGVLLGTVAV 221
           T+L++ +L+      L    YV+ I V LGT  V
Sbjct: 259 TVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFV 292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 322 TILSIVSLVQEVALVLVICLYVELIGVLLGTVAV 221
           T+L++ +L+      L    YV+ I V LGT  V
Sbjct: 259 TVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFV 292


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 322 TILSIVSLVQEVALVLVICLYVELIGVLLGTVAV 221
           T+L++ +L+      L    YV+ I V LGT  V
Sbjct: 198 TVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFV 231


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 235 PTRPRSVPHTNR*RGRALLPVPNSQW 312
           P    +VP  ++ +   L P PN +W
Sbjct: 211 PVTLTTVPKHSKTKSPKLRPYPNWEW 236


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 145 GLFLEPDFVQV 113
           G  L+PDFVQ+
Sbjct: 232 GASLKPDFVQI 242


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 223 RLQSPTRPRSVPHTNR*RGRA 285
           R +SP RP +V +    +GRA
Sbjct: 334 RNRSPVRPATVQYDTCCQGRA 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,645
Number of Sequences: 438
Number of extensions: 1679
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)