Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2029
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   1.1  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   2.0  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   2.0  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   6.1  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   6.1  

>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 183 GTRREEHHLLRNRP 142
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 183 GTRREEHHLLRNRP 142
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 183 GTRREEHHLLRNRP 142
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 185 LDRGKAPPSGRD 220
           LDRGK  P G++
Sbjct: 49  LDRGKCSPDGQE 60


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 185 LDRGKAPPSGRD 220
           LDRGK  P G++
Sbjct: 49  LDRGKCSPDGQE 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,589
Number of Sequences: 336
Number of extensions: 2150
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)