Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2029
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   172   2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   102   2e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    79   3e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    54   1e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    50   1e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    44   9e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    44   1e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    31   0.068
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.16 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.48 
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   1.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   2.6  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   4.5  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   4.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   5.9  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    24   7.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  172 bits (418), Expect = 2e-44
 Identities = 76/83 (91%), Positives = 81/83 (97%)
 Frame = +3

Query: 93  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 272
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 273 RGILTLKYPIEHGIVTNWDDMEE 341
           RGILTLKYPIEHGIV NWDDME+
Sbjct: 62  RGILTLKYPIEHGIVNNWDDMEK 84



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 340 KIWHHSFYNELRVGPDEHP 396
           KIWHH+FYNELRV P+EHP
Sbjct: 84  KIWHHTFYNELRVAPEEHP 102


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  102 bits (244), Expect = 2e-23
 Identities = 44/77 (57%), Positives = 57/77 (74%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 290
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG EAQ+ RG+L +
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71

Query: 291 KYPIEHGIVTNWDDMEE 341
           + PIE GI+ NW DMEE
Sbjct: 72  QRPIERGIIQNWSDMEE 88


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 78.6 bits (185), Expect = 3e-16
 Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
 Frame = +3

Query: 99  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 272
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VGDEA++ 
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61

Query: 273 RGILTLKYPIEHGIVTNWDDMEE 341
           R +L +KYP+E+GI+ ++++M +
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQ 84


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 24/115 (20%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 239
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G         M  K        
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66

Query: 240 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEEDLASFLLQ*AACRP 383
                 D ++G++A  K     +L YPI HG + NWD ME      L +   C P
Sbjct: 67  RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 290
           LV+DNGS   +AG+ G+  P+ VF ++V R R +     + +  + VG++   + G  ++
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82

Query: 291 -KYPIEHGIVTNWDDMEEDL 347
            + P E  +++NWD ME+ L
Sbjct: 83  ARSPFERNVISNWDLMEQVL 102


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 44.0 bits (99), Expect = 9e-06
 Identities = 27/78 (34%), Positives = 42/78 (53%)
 Frame = +3

Query: 96  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 275
           +EV+A+V+D GS   + GF+G+D P+ V PS  G       + G    + Y+    +S  
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61

Query: 276 GILTLKYPIEHGIVTNWD 329
           G + +K  I +G V NWD
Sbjct: 62  G-MEIKNAIRNGWVENWD 78


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = +3

Query: 96  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 275
           EE+ +LV+D GS   + G+AG+++P  + PS      + GV   +  ++ YV DE Q   
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61

Query: 276 GI--LTLKYPIEHGIVTNWD 329
            I  + +K    +GI+ +W+
Sbjct: 62  PIPGMEVKNGKSNGIIQDWE 81


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 31.1 bits (67), Expect = 0.068
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 156 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 299
           G+  PRA F  ++  P H G+++ M  KD   G+E  S +G  + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -1

Query: 253 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 92
           PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 264 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 175
           +  L+ K+PS PY  SRP   A   S  TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = -3

Query: 293 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 114
           F G   +F  CLI++IR  +SH            D  EHG   II C T L   G I+YY
Sbjct: 47  FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 256 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 140
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 293 FEGQDTSFALCLISYIRVLLSHTDHHA 213
           +EG+DT+      +Y+R++L  TD  A
Sbjct: 74  YEGEDTTRITRFANYLRIILPGTDQKA 100


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 370 AHCRRNDAKSSSMSSQLVTIPCSMGYLRVRIPLL 269
           A  R++D  S  +SSQ    P  M YLR R P L
Sbjct: 552 AEYRKDDPSSFRLSSQFTLYPQFMYYLR-RSPFL 584


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 216 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 302
           +M+G     +Y+G  AQ KR +LT +  I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +3

Query: 123 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 275
           N +GM         + R  F S VG  +     VG       Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAG 158
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 143 LAHTGAIVYYQRGNFFVAHLELVF 72
           L  TGAIV Y  G FF +   L+F
Sbjct: 56  LFRTGAIVAYILGMFFTSSFMLLF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,127
Number of Sequences: 5004
Number of extensions: 36896
Number of successful extensions: 104
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)