Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2029
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   3.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   3.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.3  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 294 YPIEHGIVTNWDDMEE-DLASFL 359
           YP+E G +TN   M E  L  FL
Sbjct: 34  YPLERGELTNSGKMREYQLGQFL 56


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 294 YPIEHGIVTNWDDMEE-DLASFL 359
           YP+E G +TN   M E  L  FL
Sbjct: 49  YPLERGELTNSGKMREYQLGQFL 71


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 132 GMCKAGFAGD 161
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 191 DRGEHGARSIISCETGLA 138
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 191 DRGEHGARSIISCETGLA 138
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 322 TGMTWRKIWHHSFYNELR 375
           +G+ W +IW  S   ++R
Sbjct: 27  SGLRWFEIWRDSLPTKMR 44



 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 GAIVYYQRGNFFVAHLELVF 72
           G +VY   G+F++  L ++F
Sbjct: 246 GYVVYSALGSFYIPMLVMLF 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,667
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)