Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2028
         (504 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma j...    34   1.6  
UniRef50_A7QGB8 Cluster: Chromosome undetermined scaffold_91, wh...    34   2.1  
UniRef50_Q4SML9 Cluster: Chromosome 18 SCAF14547, whole genome s...    33   2.8  
UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    33   3.7  
UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila m...    33   4.8  
UniRef50_UPI000049899A Cluster: hypothetical protein 83.t00015; ...    32   6.4  
UniRef50_Q21179 Cluster: Zinc metalloproteinase nas-18 precursor...    32   6.4  
UniRef50_Q8BGI5 Cluster: Peroxisome assembly protein 26; n=8; Eu...    32   8.5  

>UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma
          japonicum|Rep: SJCHGC09205 protein - Schistosoma
          japonicum (Blood fluke)
          Length = 215

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 12 LELVDPPGCRNSAGAGPRERDRVV 83
          LELVDPPGCRNSA      + +V+
Sbjct: 11 LELVDPPGCRNSARGSQEHQSQVL 34


>UniRef50_A7QGB8 Cluster: Chromosome undetermined scaffold_91, whole
           genome shotgun sequence; n=3; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_91, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 1019

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 217 APRRPPVGSERSAAPRLGKSNTQYTMYCFNSTHQTNRRRTLLFHFTTLSRSRGPAPAEFL 38
           AP  PP+ SE    P L +++  Y  + +++TH T     ++  F +L      A    +
Sbjct: 153 APGLPPIPSEDMPTPVLDRTSKAYESFVYHTTHITKSAGIIVNSFESLESKAVKA----I 208

Query: 37  QPGGSTSSRPTP 2
           + G     RPTP
Sbjct: 209 KDGLCVRDRPTP 220


>UniRef50_Q4SML9 Cluster: Chromosome 18 SCAF14547, whole genome
           shotgun sequence; n=3; Eumetazoa|Rep: Chromosome 18
           SCAF14547, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 583

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = -3

Query: 238 PGGVSLTAPRRPPVGSERSAAPRLGKSNTQYTMYCFNSTHQTNRRRTLLFHFTTLSRSRG 59
           PG     AP R P GS   A+ RLG +  +Y   C  ++   +         TT   S  
Sbjct: 223 PGNAQQAAPGRDPGGSRSDASSRLGPAWLEYKSSCPPASPPVSALSQPATSGTTAGASAR 282

Query: 58  PAPAEFLQPGGSTSSRPT 5
           P PA    P  ST++  T
Sbjct: 283 PTPA----PRASTTAAKT 296


>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 12 LELVDPPGCRNSAGAGP 62
          LELVDPPGCRNSA  GP
Sbjct: 11 LELVDPPGCRNSA-RGP 26


>UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila
          melanogaster|Rep: Elastin like protein - Drosophila
          melanogaster (Fruit fly)
          Length = 110

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 12 LELVDPPGCRNSA 50
          LELVDPPGCRNSA
Sbjct: 10 LELVDPPGCRNSA 22


>UniRef50_UPI000049899A Cluster: hypothetical protein 83.t00015;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 83.t00015 - Entamoeba histolytica HM-1:IMSS
          Length = 366

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
 Frame = +3

Query: 243 LNTTFNRTLPSYSPIQTHLV-----VLTLASFHEAQRVLS 347
           +++ FNRT+PSYS I+ +LV     V++L S +  Q +LS
Sbjct: 125 ISSPFNRTIPSYSSIKLYLVIGICIVISLTSLYLFQSILS 164


>UniRef50_Q21179 Cluster: Zinc metalloproteinase nas-18 precursor;
           n=1; Caenorhabditis elegans|Rep: Zinc metalloproteinase
           nas-18 precursor - Caenorhabditis elegans
          Length = 410

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 226 SLTAPRRPPVGSERSAAPRLGKSNTQYTMYCFNSTHQTNRRRTLLFHFTTLS 71
           S  AP  PP    RS  P   K      +YCF+S+  T +R  +LF    +S
Sbjct: 70  SFRAPVAPPSRPRRSQLPSSAK-----LLYCFDSSFSTEKRELMLFSMNFIS 116


>UniRef50_Q8BGI5 Cluster: Peroxisome assembly protein 26; n=8;
           Eutheria|Rep: Peroxisome assembly protein 26 - Mus
           musculus (Mouse)
          Length = 305

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +3

Query: 213 GAVRDTPPG*LNTTFNRTLPSYSPI-QTHLVVLTLAS--FHEAQR--VLSVNFS--RKVR 371
           GAV D     L    N+ LP Y  + + H+  L L S    EA+   V S  FS  ++V 
Sbjct: 131 GAVLDVASAWLQDPDNQGLPDYGSLARLHVFRLLLPSGRLSEAEELAVRSAAFSEEQRVE 190

Query: 372 ARYYAHLGRR*HTPSQSNEH 431
           A    HL R+ HT   + EH
Sbjct: 191 ALQAIHLARQQHTQEHTQEH 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,083,333
Number of Sequences: 1657284
Number of extensions: 11573675
Number of successful extensions: 33278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33100
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)