Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2028
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    26   2.8  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   3.7  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   4.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   6.5  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   6.5  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   8.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   8.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.5  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -3

Query: 103 RTLLFHFTTLSRSRGP---APAEFLQPGGSTSSR 11
           RT L    TLS   G    A AEF  PGGS   R
Sbjct: 23  RTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDR 56


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 316 PVSTKHNVSYL*TFLEKYGLATTHTW 393
           P S K    YL   +EKYG    HTW
Sbjct: 97  PKSQKSAYGYLQVGVEKYGGGIWHTW 122


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 404 LSAAQVCVVASPYFSRKVHR*DTLCFVE 321
           LS + + +++SPYF++ + R DT+ + E
Sbjct: 427 LSPSLLALLSSPYFTKWIERSDTVMYRE 454


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 438 SVGVRWTARACVIGGP-SVRS 379
           S+GV+W  RAC   GP SVR+
Sbjct: 733 SLGVQWLERACKSKGPESVRA 753


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 368 TGSLLRTLGPPITHALAVQRTPTLAHRHA 454
           T SL+R+L   +      QR PTL   HA
Sbjct: 527 TSSLIRSLANKLAATKTDQRIPTLTPEHA 555


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 135 VSIRPTKRIDVERYYFTLLPYLVL 64
           V+I P +R+D E YY + +  LV+
Sbjct: 351 VNISPNERLDAELYYTSCIRKLVI 374


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 432 RHLHTDTLRRCVSAIMRITDAI 497
           RH H   + RCV++I RI   I
Sbjct: 332 RHRHMKYIDRCVTSIFRIDSVI 353


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 58   VRENEIG**SEIITFYVY---SFGGSN*NNTLCIAYSISLIVVRPSVRYLP 201
            V ENE+G  +E +  Y     +F G   ++  C+A     + +  S RYLP
Sbjct: 1296 VAENELGWINEHMAKYKLDNNAFSGLRLSSAACVALPTCGLAMAESERYLP 1346


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 TFNRTLPSYSPIQTHLVVLTL 314
           TFNR LP Y+   ++L  LTL
Sbjct: 231 TFNRVLPLYTISHSNLSTLTL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,113
Number of Sequences: 5004
Number of extensions: 45565
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)