Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2028
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1059 + 30467324-30467452,30469008-30469082,30469439-304694...    29   1.6  
07_01_0128 + 956953-957166,957657-958309                               29   2.8  
03_03_0110 - 14523712-14525183,14525482-14525749                       29   2.8  
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    28   3.7  
08_02_1283 - 25861355-25862755                                         27   8.6  

>04_04_1059 +
           30467324-30467452,30469008-30469082,30469439-30469495,
           30469587-30469747,30469850-30469990,30470148-30470191,
           30470854-30470972,30471039-30471138,30471347-30471453,
           30471944-30471991
          Length = 326

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 358 LEKYGLATTHTWAADNTRPRSPTNT 432
           LEK+G A    WA D+  P  PT+T
Sbjct: 94  LEKHGFARNRFWAIDDNPPPFPTST 118


>07_01_0128 + 956953-957166,957657-958309
          Length = 288

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 ARQFPRSTTCPICELFSKSTGSLL 382
           AR +P + TCP+C + S+S   LL
Sbjct: 203 ARGWPNNGTCPLCRVTSESASHLL 226


>03_03_0110 - 14523712-14525183,14525482-14525749
          Length = 579

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 357 SRKVRARYYAHLGRR*HTPSQSNEHRHLHTDTLRRCVSAIMRITDAI 497
           +R V ARY AHLG +   P+  +   H H + +     A+ R+ D +
Sbjct: 462 TRHVLARYVAHLGAQQDDPAYRSWDVH-HQEAVDHISKALKRVIDTV 507


>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 115 FGGSN*NNTLCIAYSISLIVVR 180
           +GG   NNTLC+A  ++L+ VR
Sbjct: 504 YGGVTMNNTLCLAVFLALVYVR 525


>08_02_1283 - 25861355-25862755
          Length = 466

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 99  RYYFTLLPYLVLADPRPPNSCSPGDPLVLD 10
           R  F  +P+LV    R     SPGD L+LD
Sbjct: 198 RLRFKRMPFLVQTQVRLVRQLSPGDSLMLD 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,967
Number of Sequences: 37544
Number of extensions: 335857
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)