Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2028
         (504 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029361-1|AAH29361.1|  264|Homo sapiens occludin/ELL domain con...    30   4.0  
AK026362-1|BAB15460.1|  264|Homo sapiens protein ( Homo sapiens ...    30   4.0  

>BC029361-1|AAH29361.1|  264|Homo sapiens occludin/ELL domain
           containing 1 protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -3

Query: 217 APRRPPVGSERSAAPRLGKSNTQYTMYCFN----STHQTNRRRTLLFHFTTLSRSRGPAP 50
           A RRPP       APR  + + +  + CF+     T +  + R    H  T     GP P
Sbjct: 24  AARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHPPGPGP-P 82

Query: 49  AEFLQPGGSTSSRPTP 2
            + L P G  +S P P
Sbjct: 83  LQGLAPRGLKTSAPRP 98


>AK026362-1|BAB15460.1|  264|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22709 fis, clone HSI13338. ).
          Length = 264

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -3

Query: 217 APRRPPVGSERSAAPRLGKSNTQYTMYCFN----STHQTNRRRTLLFHFTTLSRSRGPAP 50
           A RRPP       APR  + + +  + CF+     T +  + R    H  T     GP P
Sbjct: 24  AARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHPPGPGP-P 82

Query: 49  AEFLQPGGSTSSRPTP 2
            + L P G  +S P P
Sbjct: 83  LQGLAPRGLKTSAPRP 98


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,954,547
Number of Sequences: 237096
Number of extensions: 1764921
Number of successful extensions: 4587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4585
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)