Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2028
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical pr...    32   0.21 
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    28   4.4  
AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   7.7  

>Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical
           protein K03B8.3 protein.
          Length = 410

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 226 SLTAPRRPPVGSERSAAPRLGKSNTQYTMYCFNSTHQTNRRRTLLFHFTTLS 71
           S  AP  PP    RS  P   K      +YCF+S+  T +R  +LF    +S
Sbjct: 70  SFRAPVAPPSRPRRSQLPSSAK-----LLYCFDSSFSTEKRELMLFSMNFIS 116


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 TILFANTNSSRCVNARQFPRSTT 337
           T    N   SRCVN R+FP+ +T
Sbjct: 584 TYALYNVRVSRCVNGREFPKLST 606


>AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical
           protein E03H12.3 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 97  TFYVYSFGGSN*NNTLCIAYSISLIVVRPSVRYLPGAVGVPLETRLPAN*TLHLIAHYHL 276
           T+ + +FG  + + TLC  Y+++ I    S+  +  A+ V  + + P N T++   + + 
Sbjct: 84  TYCMLAFGNDS-SCTLCDIYAVNKITQSNSITNIKTAIKVDSQFQCPKNMTINQYNYTNG 142

Query: 277 IRQYK 291
              YK
Sbjct: 143 FNNYK 147


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 85  FTTLSRSRGPAPAEFLQPGGSTSSRPTP 2
           F    R   P PA  L PG STS  P P
Sbjct: 20  FPPKPREGAPPPAPPLAPGASTSQAPPP 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,880
Number of Sequences: 27780
Number of extensions: 276580
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)