Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2028
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   4.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.3  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 55  APAEFLQPGGSTSSR 11
           A  EFL PGGS   R
Sbjct: 66  AKCEFLNPGGSVKDR 80


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 378 SEPVLFEKSSQIGHVVLRGNWRALTQRDE 292
           S+ VLF+K +  GH  ++G   + +   E
Sbjct: 21  SDNVLFDKRAPTGHQEMQGKQNSASLNSE 49


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 378 SEPVLFEKSSQIGHVVLRGNWRALTQRDE 292
           S+ VLF+K +  GH  ++G   + +   E
Sbjct: 21  SDNVLFDKRAPTGHQEMQGKQNSASLNSE 49


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 378 SEPVLFEKSSQIGHVVLRGNWRALTQRDE 292
           S+ VLF+K +  GH  ++G   + +   E
Sbjct: 21  SDNVLFDKRAPTGHQEMQGKQNSASLNSE 49


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 334 CASWKLASVNTTR*VCIG 281
           C  WK+    TT  +C+G
Sbjct: 488 CCWWKICWTITTPAICVG 505


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 334 CASWKLASVNTTR*VCIG 281
           C  WK+    TT  +C+G
Sbjct: 541 CCWWKICWTITTPAICVG 558


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 164 EIEYAIHNVLF 132
           E+E A+HNV+F
Sbjct: 450 ELEKALHNVMF 460


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 378 SEPVLFEKSSQIGHVVLRG 322
           S+ VLF+K +  GH  ++G
Sbjct: 21  SDNVLFDKRAPTGHQEMQG 39


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 362  KSTGSLLRTLGPPITHA 412
            +S+ S LRTL PPI+ A
Sbjct: 1843 RSSRSSLRTLLPPISVA 1859


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 362  KSTGSLLRTLGPPITHA 412
            +S+ S LRTL PPI+ A
Sbjct: 1839 RSSRSSLRTLLPPISVA 1855


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,084
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)