Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2021
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 252 4e-68
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 102 7e-23
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 62 7e-11
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 48 2e-06
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 43 4e-05
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 38 0.002
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 29 0.78
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 29 1.0
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 28 1.8
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.4
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 27 4.2
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 7.3
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 7.3
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 9.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.6
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 252 bits (617), Expect = 4e-68
Identities = 124/215 (57%), Positives = 158/215 (73%), Gaps = 1/215 (0%)
Frame = +1
Query: 154 ALVNVPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFK 330
A +P T+ T L NGL +ATE A TATV + +DAGSR ET+KNNG AHFLEH+AFK
Sbjct: 15 ATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFK 74
Query: 331 GTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEP 510
GT RSQ LEL EN GAHLNAYTSREQTV+YA N VP AV +LADI+ NSS++
Sbjct: 75 GTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134
Query: 511 EIERERGVILREMQDVESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSY 690
+ERER VILRE ++V+ EVVFDHLHATA+QG PLG+TILGP +NI+ +++ DL Y
Sbjct: 135 AVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQY 194
Query: 691 IRNHYQPGRIGLSGAGGVKHEKVVDLASKHFSGLK 795
I+++Y+ R+ +S AG + HE++V LA K+F L+
Sbjct: 195 IKDNYRSDRMIISSAGSISHEELVKLAEKYFGHLE 229
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 102 bits (244), Expect = 7e-23
Identities = 53/206 (25%), Positives = 107/206 (51%)
Frame = +1
Query: 190 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 369
L NG+ + + +G+++ AGSRYET K +GV+HF++ +AF+ T + +++
Sbjct: 51 LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110
Query: 370 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREM 549
+EN+G + TSRE ++ A +DV ++LA+ + + E ++ R I+ E
Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYEN 170
Query: 550 QDVESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIGLS 729
++ + ++ + H TAFQ LG +L + I+ ++ Y++ Y+P + L+
Sbjct: 171 SELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLA 230
Query: 730 GAGGVKHEKVVDLASKHFSGLKNFTL 807
A G+ E ++ + + L + +L
Sbjct: 231 YA-GIPQEIAKEITKELYGHLPSSSL 255
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 62.5 bits (145), Expect = 7e-11
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Frame = +1
Query: 199 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 378
G+ A ++ AT ++ + I+AGSRY+ GV+H LE AFK T +RS + E
Sbjct: 30 GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87
Query: 379 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILR-EMQD 555
+G L+ +RE + A+ L + +LA+++ + ++ E R E +
Sbjct: 88 LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESEL 147
Query: 556 VESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIGLSGA 735
++ V LH AF +G + P IS +++ + Y + +
Sbjct: 148 FREDILRVAMAKLHEKAFH-RGIGNEVYLPASASPSIS--EIKDFASKAYVKSNFSVI-S 203
Query: 736 GGVKHEKVVDLASKHFS 786
G +K DL +K+F+
Sbjct: 204 SGPDVQKASDLCAKYFA 220
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 47.6 bits (108), Expect = 2e-06
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 13/179 (7%)
Frame = +1
Query: 277 ETSKNNGVAHFLEHMAFKGTSKRSQTD-LELLVENMGAHLNAYTSREQTVFYAKCLAND- 450
E N G H LEH+ F G+ K L +NA T + T + D
Sbjct: 52 EAHDNLGCPHTLEHLCFMGSKKYPMNGILTKFAGRACGDINACTDVDYTSYELSAAEEDG 111
Query: 451 ----VPV-AVEILADIIQNSSLAEPEIE-----RERGVILREMQDVESNLQEVVFDHLHA 600
+PV A IL+ I+ + + E GV+ EMQ+ +S+ +V+FD +
Sbjct: 112 FLRLLPVFADHILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSETDVMFDCMRT 171
Query: 601 TAFQGTP-LGQTILGPTKNIKKISKADLQSYIRNHYQPGRIGLSGAGGVKHEKVVDLAS 774
+ + T G ++K+S ++ Y + Y P I L G + +++ AS
Sbjct: 172 SQYPVTSGYYYETGGHPSELRKLSIEKIREYHKEMYVPSNICLIVTGCINESRLLSCAS 230
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 43.2 bits (97), Expect = 4e-05
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +1
Query: 178 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 351
+L L+N L + D A+ + + GS+ + G+AHF EH+ F GT K +
Sbjct: 25 RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84
Query: 352 TDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE-R 528
+ +E+ NAYT+ T +Y + + + A++ A + E +RE R
Sbjct: 85 NEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDRFAQFFIDPLFLEECKDREIR 144
Query: 529 GVILREMQDVESN 567
V ++++S+
Sbjct: 145 AVDSEHCKNLQSD 157
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 37.5 bits (83), Expect = 0.002
Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 21/194 (10%)
Frame = +1
Query: 265 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVF-YAK 435
G + + G+ H LEH G++K D ++L ++ +NA+T+ + T + +A
Sbjct: 78 GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFTFYPFAT 137
Query: 436 CLANDVPVAVEILADIIQNSSLAEPEIERE------------------RGVILREMQDVE 561
D ++ D L + + +E GV+ EM+
Sbjct: 138 VNTTDYKNLRDVYLDATLFPKLRKLDFLQEGWRFEHADVNDKKSPIIFNGVVYNEMKGQV 197
Query: 562 SNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIGLSGAGG 741
S+ + + FQGT G G I + +L + R+HY P + G
Sbjct: 198 SDSSYIFYMLFQQHLFQGTAYGFNSGGDPLAIPDLKYEELVKFHRSHYHPSNAKILSYGS 257
Query: 742 VKHEKVVDLASKHF 783
E + S+ F
Sbjct: 258 FPLEDNLSALSETF 271
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 29.1 bits (62), Expect = 0.78
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 648 GRSKNCLSQWGTLECCCVKVIKHNLLKVTFDILHFAKNDTAFSF 517
GRS C +WG L+ C + N LKVT + F N+ +F
Sbjct: 2146 GRSFACKKRWGFLQMPCT---RENFLKVTLQV--FKSNEDTCNF 2184
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 358 SPSVIFYWYL*KPCVQGNERHHCSWRFHS 272
+PS W L ++ RHHC W++++
Sbjct: 329 NPSSPIQWSLISKNMRNRHRHHCRWKYYT 357
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 537 NDTAFSFDFGFGEGGILYDISKDLYCYG 454
N F +F G+ G+ YDI + L YG
Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 301 AHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAV-EILA 477
A+F + +G+ S T L V N + ++ RE+ VF + PV++ + +
Sbjct: 430 AYFSKSRYVEGSGSMSTTPLATSVNNSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKS 489
Query: 478 DIIQNSSLAEPE 513
+ I S A PE
Sbjct: 490 EPIFRSDTASPE 501
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 593 FTQQHSKVPHWDKQFLDL-PKILRKSLRLT 679
+ ++H K PHWD +D+ + +++ LRLT
Sbjct: 306 YYEKHLKQPHWDGSDIDMGVQRMQEMLRLT 335
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/107 (21%), Positives = 43/107 (40%)
Frame = +1
Query: 214 TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHL 393
T+ SG +GLW+ Y+ SK + + F+ + LEL + M
Sbjct: 280 TQGSGIFLTAIGLWL-----YDRSKKGNLYESCKVKEFEKDA------LELEEQTMEDEK 328
Query: 394 NAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 534
+ +S Q+ FY K + ++ + +I +S + + GV
Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGV 375
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 380 WVHT*TPTPPGNKQFFTQNASLMTFP 457
W H TPT P + Q T N+SL P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 315 FKEMSDTIVLGGFIAGASVDPESYSGSGGSRIFSSN 208
F+ + + + G +I +D ++ + GGSR+F N
Sbjct: 328 FEHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRN 363
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 266 PASIQSPTVAVAAPESSVAIRKPLSSTVS 180
P+S++ P P S ++ + P S+TVS
Sbjct: 189 PSSLEKPAGTGDLPSSEISTKAPASTTVS 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,339
Number of Sequences: 5004
Number of extensions: 76198
Number of successful extensions: 201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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