Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2018
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0369 - 20691100-20691235,20691318-20691488,20691540-206919... 29 1.3
04_03_0365 - 14950398-14950880,14950967-14951262,14951277-149514... 29 1.3
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 29 2.2
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 28 2.9
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 27 5.1
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 27 5.1
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 27 6.8
02_04_0359 - 22350435-22351040 27 6.8
05_07_0317 - 29193940-29193978,29194208-29194496,29194579-291947... 27 9.0
>05_04_0369 -
20691100-20691235,20691318-20691488,20691540-20691940,
20692084-20692452,20692540-20692986,20693065-20693772
Length = 743
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 360 RTQRRSQTAPGPCPPRRKTSA 422
R R TAPG CPP+R SA
Sbjct: 473 RVTARPTTAPGGCPPKRPASA 493
>04_03_0365 -
14950398-14950880,14950967-14951262,14951277-14951413,
14951562-14952039,14952203-14952215
Length = 468
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 360 RTQRRSQTAPGPCPPRRKTSA 422
R R TAPG CPP+R SA
Sbjct: 396 RVTARPTTAPGGCPPKRPASA 416
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 297 GLLTQVLLDKSIDSSCLEWLRRTQRRSQTAPGPCP 401
G L +L +++++ L WL R RR +AP P P
Sbjct: 8 GFLLGLLALAALEAAALLWLVRRLRRRDSAPQPAP 42
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 199 NLCVNFVCRDHLICRY 246
NLC +C +H +CRY
Sbjct: 467 NLCWKLICMEHAVCRY 482
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 145 RTYCSLYIFYSTSLTDPACT-GVISSISFVQRNSARYPVNRCR 20
R S+Y Y SLT P CT GV+ +I R +RY ++ R
Sbjct: 200 RGRASVYYRYMGSLTTPPCTQGVVWTIVKRVRTVSRYQLDLLR 242
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 94 ACTGVISSISFVQRNSARYPVNRCRREFWL 5
A TG+ I+ P+N CR++ WL
Sbjct: 321 AGTGIAELIALEMSKQTEIPINDCRKKVWL 350
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 205 CVNFVCRDHLICRYTGPSAGPC 270
C + +CR+ L+ + PS GPC
Sbjct: 912 CAHRMCRECLLSSWRTPSGGPC 933
>02_04_0359 - 22350435-22351040
Length = 201
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 97 PACTGVISSISFVQRNSARYPVNRCRREFWL 5
PA ++ + V +A +P RCR FWL
Sbjct: 18 PAAAAAVAGAAGVGVGAAAWPRRRCRDVFWL 48
>05_07_0317 -
29193940-29193978,29194208-29194496,29194579-29194749,
29194829-29195715,29195803-29196249,29196328-29197056
Length = 853
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 360 RTQRRSQTAPGPCPPRRKTSA 422
R R TAPG PP+R TSA
Sbjct: 480 RVTARPTTAPGGRPPKRPTSA 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,907
Number of Sequences: 37544
Number of extensions: 252092
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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